Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12a17r
         (434 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal pro...   206   7e-54
U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical pr...    29   1.1  
AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical ...    28   2.5  
U41547-3|AAA83193.2|  145|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 22 protein.
          Length = 130

 Score =  206 bits (502), Expect = 7e-54
 Identities = 101/124 (81%), Positives = 112/124 (90%), Gaps = 2/124 (1%)
 Frame = -1

Query: 377 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 198
           MVRMNVL+DAL +I+NAEKRGKRQVLIRP SKVIV+FLTVMMKHGYIGEFEIVDDHRAGK
Sbjct: 1   MVRMNVLADALNAINNAEKRGKRQVLIRPASKVIVRFLTVMMKHGYIGEFEIVDDHRAGK 60

Query: 197 IVVNLTG-LNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGAIMDHEEARRKH 24
           IVVNLTG LNK  VISPR ++ +ND+E++TN LLPSRQFGYL+LTTS  IMDHEEARRKH
Sbjct: 61  IVVNLTGRLNKASVISPRLNIRLNDLEKYTNTLLPSRQFGYLILTTSAGIMDHEEARRKH 120

Query: 23  LEEK 12
           L  K
Sbjct: 121 LGGK 124


>U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical protein
            F37A4.4 protein.
          Length = 1163

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -1

Query: 365  NVLSDALKSIH--NAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV 192
            NVL D+++ I+  N  K  KR   I  C+K     L V  + GY    EI+  H A +  
Sbjct: 826  NVLIDSVREINATNLLKAVKRGAYINVCNKYGNTALHVATRRGYQNLVEILIKHGADRSF 885

Query: 191  VN 186
            +N
Sbjct: 886  LN 887


>AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical
           protein F21E9.5 protein.
          Length = 864

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -1

Query: 242 YIGEFEIVDDHRAGKIVVNLTGLNKCGVISPRFDVPINDIERWTNLLPSRQF 87
           YIG   +   +  G+I+      N+   I+ +F  PIN   RWT++ P   F
Sbjct: 116 YIGTHAMEPRNDTGEILATFCESNRLWHINSQFYKPIN--RRWTHVSPDGMF 165


>U41547-3|AAA83193.2|  145|Caenorhabditis elegans Hypothetical
           protein F22A3.2 protein.
          Length = 145

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 225 FKLSDVTVLHHHC*KLNDDFGTGPDEDL 308
           F+  +V V +     ++DDFG+ PD+DL
Sbjct: 35  FRCGNVPVKNVQVKLIDDDFGSDPDDDL 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,600,350
Number of Sequences: 27780
Number of extensions: 183027
Number of successful extensions: 384
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)