Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12a17f
(484 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62244 Cluster: 40S ribosomal protein S15a; n=205; Euka... 238 5e-62
UniRef50_UPI0000608089 Cluster: PREDICTED: similar to Rps15a pro... 220 2e-56
UniRef50_Q9LX88 Cluster: 40S ribosomal protein S15a-4; n=14; Mag... 210 2e-53
UniRef50_A6NIS3 Cluster: Uncharacterized protein ENSP00000348155... 202 2e-51
UniRef50_UPI0001552BC3 Cluster: PREDICTED: similar to Rps15a pro... 200 1e-50
UniRef50_UPI0000D9C93A Cluster: PREDICTED: similar to ribosomal ... 188 4e-47
UniRef50_Q9M0E0 Cluster: 40S ribosomal protein S15a-5; n=5; Magn... 128 9e-29
UniRef50_Q8U014 Cluster: 30S ribosomal protein S8P; n=24; Archae... 125 6e-28
UniRef50_Q8PV35 Cluster: 30S ribosomal protein S8P; n=14; Euryar... 120 2e-26
UniRef50_O05636 Cluster: 30S ribosomal protein S8P; n=12; Archae... 119 4e-26
UniRef50_Q8SQL9 Cluster: 40S RIBOSOMAL PROTEIN S15A; n=1; Enceph... 118 5e-26
UniRef50_Q6L1B2 Cluster: 30S ribosomal protein S8P; n=4; Euryarc... 108 6e-23
UniRef50_O28369 Cluster: 30S ribosomal protein S8P; n=3; Euryarc... 107 1e-22
UniRef50_A7D102 Cluster: Ribosomal protein S8; n=1; Halorubrum l... 103 3e-21
UniRef50_A0RVY8 Cluster: 30S ribosomal protein S8P; n=3; Thermop... 98 8e-20
UniRef50_Q01GJ6 Cluster: Ribosomal protein S15; n=1; Ostreococcu... 57 2e-17
UniRef50_Q74NG1 Cluster: 30S ribosomal protein S8P; n=1; Nanoarc... 80 3e-14
UniRef50_UPI0000DA3D5D Cluster: PREDICTED: similar to ribosomal ... 48 1e-04
UniRef50_Q2GL45 Cluster: 30S ribosomal protein S8; n=8; Ricketts... 45 0.001
UniRef50_P46757 Cluster: Mitochondrial ribosomal protein S8; n=1... 42 0.007
UniRef50_Q8A490 Cluster: 30S ribosomal protein S8; n=15; Bacteri... 42 0.007
UniRef50_Q81VR6 Cluster: 30S ribosomal protein S8; n=96; cellula... 42 0.010
UniRef50_Q2S3Q0 Cluster: 30S ribosomal protein S8; n=2; Sphingob... 41 0.017
UniRef50_A1USQ8 Cluster: 30S ribosomal protein S8; n=5; Bacteria... 41 0.017
UniRef50_Q2YIA3 Cluster: Ribosomal protein S8; n=20; Halimeda|Re... 40 0.022
UniRef50_Q62GL9 Cluster: 30S ribosomal protein S8; n=68; Bacteri... 39 0.068
UniRef50_UPI0000E1E986 Cluster: PREDICTED: hypothetical protein;... 38 0.090
UniRef50_Q0P3I4 Cluster: Mitochondrion, complete genome; n=1; Os... 38 0.090
UniRef50_Q7XYA5 Cluster: Ribosome protein S8; n=1; Griffithsia j... 38 0.12
UniRef50_Q6MJ26 Cluster: 30S ribosomal protein S8; n=1; Bdellovi... 38 0.12
UniRef50_Q7M8E6 Cluster: 30S ribosomal protein S8; n=26; Epsilon... 38 0.16
UniRef50_Q0JQL2 Cluster: Os01g0153200 protein; n=4; Oryza sativa... 36 0.48
UniRef50_P56801 Cluster: Chloroplast 30S ribosomal protein S8; n... 36 0.48
UniRef50_Q2JIL4 Cluster: 30S ribosomal protein S8; n=93; cellula... 35 0.84
UniRef50_Q06SG0 Cluster: Chloroplast 30S ribosomal protein S8; n... 35 0.84
UniRef50_Q9HWE9 Cluster: 30S ribosomal protein S8; n=46; Bacteri... 35 1.1
UniRef50_A6DRC4 Cluster: 30S ribosomal protein S8; n=1; Lentisph... 34 1.5
UniRef50_O21254 Cluster: Ribosomal protein S8; n=1; Reclinomonas... 33 2.6
UniRef50_Q9ZCR9 Cluster: 30S ribosomal protein S8; n=9; Ricketts... 33 2.6
UniRef50_Q6D8U4 Cluster: Putative uncharacterized protein; n=1; ... 33 3.4
UniRef50_Q76YD0 Cluster: Putative uncharacterized protein; n=1; ... 33 3.4
UniRef50_Q73NX9 Cluster: ISTde2, transposase; n=4; Bacteria|Rep:... 33 4.5
UniRef50_P73307 Cluster: 30S ribosomal protein S8; n=9; cellular... 33 4.5
UniRef50_Q749V8 Cluster: Putative uncharacterized protein; n=4; ... 32 5.9
UniRef50_Q6AKK5 Cluster: Sensor protein; n=1; Desulfotalea psych... 32 5.9
UniRef50_Q9G903 Cluster: Ribosomal protein S8; n=1; Ochromonas d... 32 5.9
UniRef50_Q3S2A0 Cluster: Ribosomal protein S8; n=1; Thalassiosir... 32 5.9
UniRef50_Q9TAI6 Cluster: Ribosomal protein S8; n=1; Cafeteria ro... 32 7.8
>UniRef50_P62244 Cluster: 40S ribosomal protein S15a; n=205;
Eukaryota|Rep: 40S ribosomal protein S15a - Homo sapiens
(Human)
Length = 130
Score = 238 bits (582), Expect = 5e-62
Identities = 113/130 (86%), Positives = 122/130 (93%), Gaps = 2/130 (1%)
Frame = +1
Query: 58 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 237
MVRMNVL+DALKSI+NAEKRGKRQVLIRPCSKVIV+FLTVMMKHGYIGEFEI+DDHRAGK
Sbjct: 1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGK 60
Query: 238 IVVNLTG-LNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGAIMDHEEARRKH 411
IVVNLTG LNKCGVISPRFDV + D+E+W NLLPSRQFG++VLTTS IMDHEEARRKH
Sbjct: 61 IVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKH 120
Query: 412 LGGKILGFFF 441
GGKILGFFF
Sbjct: 121 TGGKILGFFF 130
>UniRef50_UPI0000608089 Cluster: PREDICTED: similar to Rps15a
protein; n=5; Amniota|Rep: PREDICTED: similar to Rps15a
protein - Mus musculus
Length = 253
Score = 220 bits (537), Expect = 2e-56
Identities = 106/130 (81%), Positives = 116/130 (89%), Gaps = 2/130 (1%)
Frame = +1
Query: 58 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 237
MVRMNVL+DALKSI+NAEKRGKRQVLIRPCSKVIV FLTVMMKHGY GEFEI+DDHR GK
Sbjct: 124 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVWFLTVMMKHGYTGEFEIIDDHRDGK 183
Query: 238 IVVNLTG-LNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGAIMDHEEARRKH 411
IVVNLTG LNKCGVIS RFDV + D+++W NLLP RQFG++VLTT I+DHEEARRKH
Sbjct: 184 IVVNLTGRLNKCGVISLRFDVQLKDLDKWQNNLLPLRQFGFIVLTTLAGIIDHEEARRKH 243
Query: 412 LGGKILGFFF 441
GGKILGFFF
Sbjct: 244 TGGKILGFFF 253
>UniRef50_Q9LX88 Cluster: 40S ribosomal protein S15a-4; n=14;
Magnoliophyta|Rep: 40S ribosomal protein S15a-4 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 130
Score = 210 bits (512), Expect = 2e-53
Identities = 99/130 (76%), Positives = 115/130 (88%), Gaps = 2/130 (1%)
Frame = +1
Query: 58 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 237
MVR++VL+D LKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 238 IVVNLTG-LNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGAIMDHEEARRKH 411
IVV L G LNKCGVISPRFDV + +IE WT LLPSRQFG++VLTTS IMDHEEARRK+
Sbjct: 61 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
Query: 412 LGGKILGFFF 441
+GGK+LGFF+
Sbjct: 121 VGGKVLGFFY 130
>UniRef50_A6NIS3 Cluster: Uncharacterized protein ENSP00000348155;
n=33; Eukaryota|Rep: Uncharacterized protein
ENSP00000348155 - Homo sapiens (Human)
Length = 129
Score = 202 bits (494), Expect = 2e-51
Identities = 98/130 (75%), Positives = 112/130 (86%), Gaps = 2/130 (1%)
Frame = +1
Query: 58 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 237
MVR NVL+DALK I+NA+KRGKRQVL+RPCS+VI++FLTV MKHGYIGEFEI DDHRAGK
Sbjct: 1 MVRTNVLADALKRINNAKKRGKRQVLLRPCSEVIIRFLTV-MKHGYIGEFEITDDHRAGK 59
Query: 238 IVVNLTG-LNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGAIMDHEEARRKH 411
+VV LT LNKCGVISPRF V + D+E+W NLLPS QFG+++LTTS I D EEARRKH
Sbjct: 60 MVVYLTDRLNKCGVISPRFHVQLKDLEKWQNNLLPSYQFGFIILTTSAGITDREEARRKH 119
Query: 412 LGGKILGFFF 441
GGKILGFFF
Sbjct: 120 TGGKILGFFF 129
>UniRef50_UPI0001552BC3 Cluster: PREDICTED: similar to Rps15a
protein; n=3; Mus musculus|Rep: PREDICTED: similar to
Rps15a protein - Mus musculus
Length = 239
Score = 200 bits (488), Expect = 1e-50
Identities = 96/131 (73%), Positives = 110/131 (83%), Gaps = 2/131 (1%)
Frame = +1
Query: 52 LAMVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRA 231
+ MV MNVL DALKS ++AEK GKRQ IR CSK IV+FLTVMMKHGYI EFEI+DDHRA
Sbjct: 97 VTMVEMNVLVDALKSTNSAEKGGKRQFPIRLCSKAIVRFLTVMMKHGYISEFEIIDDHRA 156
Query: 232 GKIVVNLTG-LNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGAIMDHEEARR 405
GK+VVNLTG LNKCGVISPRFDV + D+E+W NLLP+RQFG++VLTT IMD EE R+
Sbjct: 157 GKMVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPARQFGFIVLTTLAGIMDREEGRQ 216
Query: 406 KHLGGKILGFF 438
KH GG+ILGFF
Sbjct: 217 KHTGGEILGFF 227
>UniRef50_UPI0000D9C93A Cluster: PREDICTED: similar to ribosomal
protein S15a; n=1; Macaca mulatta|Rep: PREDICTED:
similar to ribosomal protein S15a - Macaca mulatta
Length = 345
Score = 188 bits (459), Expect = 4e-47
Identities = 91/117 (77%), Positives = 102/117 (87%), Gaps = 2/117 (1%)
Frame = +1
Query: 79 SDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTG 258
SDALKSI+NAEKRGKRQVLIR CSKVIV+FL+VMMKHGYIGEFEI+DDH AGKIVVNLTG
Sbjct: 174 SDALKSINNAEKRGKRQVLIRLCSKVIVRFLSVMMKHGYIGEFEIIDDHTAGKIVVNLTG 233
Query: 259 -LNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGAIMDHEEARRKHLGGK 423
LNKCGVI+ RFDV D+E+W NL PS QFG++VLTTS IMDHEEAR+KH G +
Sbjct: 234 RLNKCGVINTRFDVQPKDLEKWRNNLFPSCQFGFIVLTTSAGIMDHEEARQKHTGSR 290
>UniRef50_Q9M0E0 Cluster: 40S ribosomal protein S15a-5; n=5;
Magnoliophyta|Rep: 40S ribosomal protein S15a-5 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 129
Score = 128 bits (308), Expect = 9e-29
Identities = 59/125 (47%), Positives = 91/125 (72%), Gaps = 2/125 (1%)
Frame = +1
Query: 73 VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 252
+L+DAL++I NAE+RGK V ++P S V+ FL +M + GYI F++ D HR G+I V+L
Sbjct: 5 ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDL 64
Query: 253 TG-LNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGAIMDHEEARRKHLGGKI 426
G +N C ++ R DV +IE++T LP+RQ+GY+V+TT I+DHEEA ++++GG++
Sbjct: 65 QGRVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVGGQV 124
Query: 427 LGFFF 441
LGFF+
Sbjct: 125 LGFFY 129
>UniRef50_Q8U014 Cluster: 30S ribosomal protein S8P; n=24;
Archaea|Rep: 30S ribosomal protein S8P - Pyrococcus
furiosus
Length = 130
Score = 125 bits (301), Expect = 6e-28
Identities = 59/130 (45%), Positives = 89/130 (68%), Gaps = 2/130 (1%)
Frame = +1
Query: 58 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 237
M ++ L++AL I N+E+ GKR+V I+P SK+I + L VM K+GYIGEFE +DD RAG
Sbjct: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
Query: 238 IVVNLTG-LNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGAIMDHEEARRKH 411
V L G +NK G I PRF V +++ E+W LP+ +FG L+++TS +M H+EA K
Sbjct: 61 YRVQLLGRINKAGAIKPRFPVKVSEFEKWEKRFLPAFEFGILIVSTSQGVMSHKEAIEKG 120
Query: 412 LGGKILGFFF 441
+GG+++ + +
Sbjct: 121 IGGRLIAYVY 130
>UniRef50_Q8PV35 Cluster: 30S ribosomal protein S8P; n=14;
Euryarchaeota|Rep: 30S ribosomal protein S8P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 130
Score = 120 bits (289), Expect = 2e-26
Identities = 60/130 (46%), Positives = 81/130 (62%), Gaps = 2/130 (1%)
Frame = +1
Query: 58 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 237
MV ++ L++AL +I NAE GK ++RP SK I L VM GYIG+FE +DD +AG
Sbjct: 1 MVLLDPLANALSTIKNAEAIGKSSCIVRPASKNIGNVLKVMQDLGYIGDFEFIDDGKAGI 60
Query: 238 IVVNLTG-LNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGAIMDHEEARRKH 411
V L G +NKCG I PR+ V ERW LP++ FG L+LTTS +M EAR K
Sbjct: 61 YSVTLVGRINKCGAIKPRYSVGTGSFERWEKQFLPAKNFGALILTTSSGVMSQYEARDKK 120
Query: 412 LGGKILGFFF 441
+GG++L + +
Sbjct: 121 IGGQLLAYVY 130
>UniRef50_O05636 Cluster: 30S ribosomal protein S8P; n=12;
Archaea|Rep: 30S ribosomal protein S8P - Sulfolobus
acidocaldarius
Length = 133
Score = 119 bits (286), Expect = 4e-26
Identities = 58/133 (43%), Positives = 86/133 (64%), Gaps = 5/133 (3%)
Frame = +1
Query: 58 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 237
M +N L++AL +++N E R +Q LI P SK+I+ L VM K GYIGEFE +DD RAGK
Sbjct: 1 MPSINPLANALATLYNNEMRRNKQALITPASKLIISVLRVMQKEGYIGEFEYIDDGRAGK 60
Query: 238 IVVNLTG-LNKCGVISPRFDVPINDIERWTN----LLPSRQFGYLVLTTSGAIMDHEEAR 402
I+V L G +NKCG ISPR+ + N + R + LPS++ G ++++T +M H +
Sbjct: 61 IIVQLLGRINKCGPISPRYPLDYNGLLRLPDYIRKYLPSKEIGIIIISTPKGVMSHRDGI 120
Query: 403 RKHLGGKILGFFF 441
R+ +GG LG+ +
Sbjct: 121 REKIGGVTLGYVY 133
>UniRef50_Q8SQL9 Cluster: 40S RIBOSOMAL PROTEIN S15A; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S15A
- Encephalitozoon cuniculi
Length = 128
Score = 118 bits (285), Expect = 5e-26
Identities = 56/124 (45%), Positives = 88/124 (70%), Gaps = 2/124 (1%)
Frame = +1
Query: 76 LSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLT 255
L++ K+I+NA + GKRQ+L+R ++ + FL M++HGYI F + D R+GK +++L
Sbjct: 5 LANMCKAINNASRAGKRQLLLRFSTEEMRMFLLQMLRHGYISGFSYIHDKRSGKSIIDLN 64
Query: 256 G-LNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGAIMDHEEARRKHLGGKIL 429
G LN+CG ISP + V + IE + T LLP+RQFG+++ TS I+DH+E +++GGKIL
Sbjct: 65 GRLNRCGAISPNYIVKRDGIEDFRTRLLPARQFGHVLFNTSKGILDHKECLTENVGGKIL 124
Query: 430 GFFF 441
G+F+
Sbjct: 125 GYFY 128
>UniRef50_Q6L1B2 Cluster: 30S ribosomal protein S8P; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S8P -
Picrophilus torridus
Length = 129
Score = 108 bits (260), Expect = 6e-23
Identities = 52/124 (41%), Positives = 81/124 (65%), Gaps = 2/124 (1%)
Frame = +1
Query: 76 LSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLT 255
L+D + +I NA + GK +V+I P S +I + L VM + YI FE++++ R GK V L+
Sbjct: 6 LNDVINTIKNASRIGKSEVIIGPASVMIGRILKVMQDYNYIKSFEVIEEERGGKFRVELS 65
Query: 256 G-LNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGAIMDHEEARRKHLGGKIL 429
+N CGVI PR V ++IER+ + LP++ FG ++LTT+ IM H EAR+ +GGK+L
Sbjct: 66 DTINNCGVIKPRLSVKNSNIERYESRYLPAQDFGIIILTTTKGIMSHIEARKLGIGGKLL 125
Query: 430 GFFF 441
+ +
Sbjct: 126 AYVY 129
>UniRef50_O28369 Cluster: 30S ribosomal protein S8P; n=3;
Euryarchaeota|Rep: 30S ribosomal protein S8P -
Archaeoglobus fulgidus
Length = 129
Score = 107 bits (257), Expect = 1e-22
Identities = 51/127 (40%), Positives = 83/127 (65%), Gaps = 2/127 (1%)
Frame = +1
Query: 67 MNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVV 246
++ LS+A+ +I NAE G+++ I+P SK+I L VM +GYI FE V++HR GK +V
Sbjct: 3 VDTLSNAMIAIKNAEMVGEKKCEIKPASKLIGNVLKVMKDYGYIKGFEYVENHRGGKFIV 62
Query: 247 NLTG-LNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGAIMDHEEARRKHLGG 420
L+G +N CG I PRF + + E + LP+R FG L+++T+ +M ++AR++ LGG
Sbjct: 63 ELSGNINDCGAIRPRFSSSVTEYEMYEKRYLPARDFGILIVSTTKGVMSQKDARKQRLGG 122
Query: 421 KILGFFF 441
+L + +
Sbjct: 123 VLLAYVY 129
>UniRef50_A7D102 Cluster: Ribosomal protein S8; n=1; Halorubrum
lacusprofundi ATCC 49239|Rep: Ribosomal protein S8 -
Halorubrum lacusprofundi ATCC 49239
Length = 147
Score = 103 bits (246), Expect = 3e-21
Identities = 48/132 (36%), Positives = 76/132 (57%), Gaps = 2/132 (1%)
Frame = +1
Query: 52 LAMVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRA 231
L M + ++AL + NAE G + P S +I L V+ GY+ FE VDD +A
Sbjct: 16 LIMTGNDPFTNALAGMDNAESVGHLSYTVEPASNIIGSVLEVLYDRGYVDGFEYVDDGKA 75
Query: 232 GKIVVNLTG-LNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGAIMDHEEARR 405
GK V L G +N+CG + PR+ ++ E+W LP+R +G L++TTS +M H EAR
Sbjct: 76 GKFEVELKGAINECGAVKPRYSAGADEFEKWEKRYLPARDYGTLIVTTSHGVMSHYEARE 135
Query: 406 KHLGGKILGFFF 441
+ +GG+++ + +
Sbjct: 136 EGIGGQVIAYVY 147
>UniRef50_A0RVY8 Cluster: 30S ribosomal protein S8P; n=3;
Thermoprotei|Rep: 30S ribosomal protein S8P -
Cenarchaeum symbiosum
Length = 130
Score = 98.3 bits (234), Expect = 8e-20
Identities = 51/130 (39%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Frame = +1
Query: 58 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 237
M N+L++ +++N E R + + P SK+ V+ L + K GYIGEFE V+D R GK
Sbjct: 1 MPATNILANLFVTLYNTEARRRGDCQVYPTSKLGVEVLGTLKKAGYIGEFEHVEDSRGGK 60
Query: 238 IVVNLTG-LNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGAIMDHEEARRKH 411
V+L + KCG ISPRF V + W LPS G LV+TT+ +M H EA +
Sbjct: 61 FSVHLLAKITKCGAISPRFKVKKGEYTFWEQQYLPSYDRGMLVVTTNQGVMSHHEAAERG 120
Query: 412 LGGKILGFFF 441
+GG ++G+ +
Sbjct: 121 IGGFLIGYVY 130
>UniRef50_Q01GJ6 Cluster: Ribosomal protein S15; n=1; Ostreococcus
tauri|Rep: Ribosomal protein S15 - Ostreococcus tauri
Length = 144
Score = 57.2 bits (132), Expect(2) = 2e-17
Identities = 25/46 (54%), Positives = 35/46 (76%)
Frame = +1
Query: 52 LAMVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKH 189
++ V + + +S++NAEKRGKRQVL+RP SKV++KFL VM KH
Sbjct: 31 VSSVALTSIFHRAESMYNAEKRGKRQVLVRPVSKVVIKFLQVMQKH 76
Score = 53.6 bits (123), Expect(2) = 2e-17
Identities = 24/31 (77%), Positives = 26/31 (83%), Gaps = 1/31 (3%)
Frame = +1
Query: 190 GYIGEFEIVDDHRAGKIVVNLTG-LNKCGVI 279
GYI EFE +DDHRAGKIVV L G +NKCGVI
Sbjct: 107 GYINEFEFIDDHRAGKIVVELNGRINKCGVI 137
>UniRef50_Q74NG1 Cluster: 30S ribosomal protein S8P; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S8P -
Nanoarchaeum equitans
Length = 129
Score = 79.8 bits (188), Expect = 3e-14
Identities = 36/126 (28%), Positives = 73/126 (57%), Gaps = 2/126 (1%)
Frame = +1
Query: 70 NVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVN 249
++++D L + N ++G+ + P S +I+K + +M + GYI + +VD R I +
Sbjct: 4 DIVADFLSHLTNVRRKGEDKTAFFPVSNLIIKLVEIMKREGYIKNYRLVDSSRGKIIEIE 63
Query: 250 LTG-LNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGAIMDHEEARRKHLGGK 423
L+ N+ I PRF V +++E++ LP+ FG L+L+TS ++ + EA+ + +GG
Sbjct: 64 LSEYFNEANAIKPRFPVEYSELEKYEKRYLPALNFGRLILSTSKGLITNREAKEQKIGGV 123
Query: 424 ILGFFF 441
++ + +
Sbjct: 124 LIAYVY 129
>UniRef50_UPI0000DA3D5D Cluster: PREDICTED: similar to ribosomal
protein S15a; n=1; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein S15a - Rattus norvegicus
Length = 60
Score = 48.0 bits (109), Expect = 1e-04
Identities = 27/52 (51%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Frame = +1
Query: 166 FLTVMMKHGYIGEFEIVDDHRAGKIVVNLTG-LNKCGVISPRFDVPINDIER 318
F+TV MK G+FEIVD+ G+I V+L G LNK GVI FDV + D+E+
Sbjct: 3 FVTVKMK---TGKFEIVDNEGVGRITVSLMGSLNKYGVIGLGFDVQLGDLEK 51
>UniRef50_Q2GL45 Cluster: 30S ribosomal protein S8; n=8;
Rickettsiales|Rep: 30S ribosomal protein S8 - Anaplasma
phagocytophilum (strain HZ)
Length = 133
Score = 44.8 bits (101), Expect = 0.001
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 6/124 (4%)
Frame = +1
Query: 76 LSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEF--EIVDDHRAGKIVVN 249
++D L + N + G +V+ PCSKV++ L ++++ GYI F E+ D + V
Sbjct: 7 IADFLTRLRNGQA-GMNKVVYVPCSKVVMAVLRILVEEGYIESFTEEVRGDSGIKVLKVF 65
Query: 250 LTGLNKCGVISP--RFDVPINDIERWTNLLPS--RQFGYLVLTTSGAIMDHEEARRKHLG 417
L N I R P + + +P G +++TS IM AR +G
Sbjct: 66 LKYFNSAAAIRKIVRVSRPGKRVYSSADKMPRFYNALGIYIVSTSKGIMLDSHARNAGVG 125
Query: 418 GKIL 429
G+IL
Sbjct: 126 GEIL 129
>UniRef50_P46757 Cluster: Mitochondrial ribosomal protein S8; n=1;
Acanthamoeba castellanii|Rep: Mitochondrial ribosomal
protein S8 - Acanthamoeba castellanii (Amoeba)
Length = 127
Score = 41.9 bits (94), Expect = 0.007
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 3/124 (2%)
Frame = +1
Query: 67 MNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAG---K 237
M++LS+ + + QV+++ SK+ + L+V+ K GYI F I D K
Sbjct: 1 MSLLSNMISIVKVGYNARHLQVIVQN-SKLCINVLSVLYKLGYIRGFIIKDQKNITILLK 59
Query: 238 IVVNLTGLNKCGVISPRFDVPINDIERWTNLLPSRQFGYLVLTTSGAIMDHEEARRKHLG 417
+ N + VIS ++ L + G+L+L+TS I+ EE+ +G
Sbjct: 60 YINNKPAVRNIAVISTPGRRTYLKHKKLEKFLTKKDSGFLILSTSKGILTDEESNMFKIG 119
Query: 418 GKIL 429
G+ L
Sbjct: 120 GEAL 123
>UniRef50_Q8A490 Cluster: 30S ribosomal protein S8; n=15;
Bacteria|Rep: 30S ribosomal protein S8 - Bacteroides
thetaiotaomicron
Length = 131
Score = 41.9 bits (94), Expect = 0.007
Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 6/128 (4%)
Frame = +1
Query: 76 LSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAG--KIVVN 249
++D L + NA K +V+ P S + + ++ + GYI ++ V+D G K+ +
Sbjct: 5 IADYLTRLRNAIG-AKHRVVEVPASNLKKEITKILFEKGYILNYKFVEDGPQGTIKVALK 63
Query: 250 LTGLNKCGVISPRFDVPINDIERWTNL--LPS--RQFGYLVLTTSGAIMDHEEARRKHLG 417
+NK I V + ++T +P G +++TS +M ++EA +G
Sbjct: 64 YDSVNKVNAIKKLERVSSPGMRKYTGYKDMPRVINGLGIAIISTSKGVMTNKEAAELKIG 123
Query: 418 GKILGFFF 441
G++L + +
Sbjct: 124 GEVLCYVY 131
>UniRef50_Q81VR6 Cluster: 30S ribosomal protein S8; n=96; cellular
organisms|Rep: 30S ribosomal protein S8 - Bacillus
anthracis
Length = 132
Score = 41.5 bits (93), Expect = 0.010
Identities = 32/131 (24%), Positives = 65/131 (49%), Gaps = 5/131 (3%)
Frame = +1
Query: 58 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 237
MV + ++D L I NA + + L P SK+ + ++ + G+I + E ++D++ G
Sbjct: 1 MVMTDPIADMLTRIRNANMV-RHEKLEVPASKIKKEIAELLKREGFIRDVEYIEDNKQGI 59
Query: 238 IVVNLT-GLNKCGVIS--PRFDVPINDIERWTNLLPS--RQFGYLVLTTSGAIMDHEEAR 402
+ + L G N VI+ R P + + +P G +++TS +M ++AR
Sbjct: 60 LRIFLKYGANNERVITGLKRISKPGLRVYAKADEVPRVLNGLGIALVSTSKGVMTDKDAR 119
Query: 403 RKHLGGKILGF 435
+ GG+++ +
Sbjct: 120 QLQTGGEVVAY 130
>UniRef50_Q2S3Q0 Cluster: 30S ribosomal protein S8; n=2;
Sphingobacteriales|Rep: 30S ribosomal protein S8 -
Salinibacter ruber (strain DSM 13855)
Length = 133
Score = 40.7 bits (91), Expect = 0.017
Identities = 32/127 (25%), Positives = 64/127 (50%), Gaps = 5/127 (3%)
Frame = +1
Query: 76 LSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAG--KIVVN 249
+S+ + + NA++ + V I P SK+ ++++ GYI F +DD + G ++ +
Sbjct: 8 VSNYMAQLRNAQEAEQTYVDI-PASKLKRAMTQILLEKGYIKNFVNIDDEKQGLLRVYLK 66
Query: 250 LTGLNKCGV-ISPRFDVPINDIERWTNLLPSRQ--FGYLVLTTSGAIMDHEEARRKHLGG 420
++ + + R P ++ LP + G ++L+TS +M +EARR +GG
Sbjct: 67 YDEYDQPAIRMLERVSRPGRREYADSDNLPEVKNGLGIVILSTSRGVMSDKEARRFGVGG 126
Query: 421 KILGFFF 441
++L F
Sbjct: 127 EVLAKVF 133
>UniRef50_A1USQ8 Cluster: 30S ribosomal protein S8; n=5;
Bacteria|Rep: 30S ribosomal protein S8 - Bartonella
bacilliformis (strain ATCC 35685 / KC583)
Length = 132
Score = 40.7 bits (91), Expect = 0.017
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
Frame = +1
Query: 76 LSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAG-KIVVNL 252
L D L I NA R K +V + P SK+ + L V+ GYI + +D + + L
Sbjct: 7 LGDMLTRIRNAISRKKSKV-VTPASKLRARVLDVLKLEGYICGYNQIDSGNGKFEFEIEL 65
Query: 253 TGLNKCGVISP--RFDVPINDIERWTN--LLPSRQFGYLVLTTSGAIMDHEEARRKHLGG 420
VI R P + T L + G +L+T +M EAR +++GG
Sbjct: 66 KYFENSSVIRTISRISKPGRRVYVSTKSILQVANGLGISILSTPKGVMTDHEAREQNVGG 125
Query: 421 KIL 429
++L
Sbjct: 126 ELL 128
>UniRef50_Q2YIA3 Cluster: Ribosomal protein S8; n=20; Halimeda|Rep:
Ribosomal protein S8 - Halimeda opuntia
Length = 133
Score = 40.3 bits (90), Expect = 0.022
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 6/132 (4%)
Frame = +1
Query: 58 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 237
MV + +SD I NA G V + P + L +++ HG+I F +++
Sbjct: 2 MVFNDSISDVFTRIRNANLVGHNTVRV-PLTLTTKSILNILVHHGFIKNFSQINNREFLV 60
Query: 238 IVVNLTGLNKCGVIS-PRFDVPINDIERWTNLLPSRQFGY-----LVLTTSGAIMDHEEA 399
+ + + L K +S P + ++ + +L S Q G + L+TS I+ EA
Sbjct: 61 TLKSKSVLRKLKRLSRPGCRLYVS-AQNLPQILRSGQLGLAPRAIIFLSTSKGILSDREA 119
Query: 400 RRKHLGGKILGF 435
R +GG+ILG+
Sbjct: 120 RHLKVGGEILGY 131
>UniRef50_Q62GL9 Cluster: 30S ribosomal protein S8; n=68;
Bacteria|Rep: 30S ribosomal protein S8 - Burkholderia
mallei (Pseudomonas mallei)
Length = 131
Score = 38.7 bits (86), Expect = 0.068
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 4/122 (3%)
Frame = +1
Query: 76 LSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLT 255
++D L I NA+ K V + P SKV V V+ GYI +F + D ++ + L
Sbjct: 7 IADMLTRIRNAQMVEKVSVSM-PSSKVKVAIAQVLKDEGYIDDFAVKADGAKAELNIALK 65
Query: 256 GLNKCGVIS--PRFDVPINDIERWTNLLPS--RQFGYLVLTTSGAIMDHEEARRKHLGGK 423
VI R P + R N +P G +++T +M +AR +GG+
Sbjct: 66 YYAGRPVIERLERVSKPGLRVYRGRNEIPQVMNGLGVAIVSTPKGVMTDRKARATGVGGE 125
Query: 424 IL 429
++
Sbjct: 126 VI 127
>UniRef50_UPI0000E1E986 Cluster: PREDICTED: hypothetical protein;
n=1; Pan troglodytes|Rep: PREDICTED: hypothetical
protein - Pan troglodytes
Length = 116
Score = 38.3 bits (85), Expect = 0.090
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = +1
Query: 196 IGEFEIVDDHRAGKIVVNLT 255
IG+FE++DDHRAGKIV NL+
Sbjct: 9 IGKFEVIDDHRAGKIVENLS 28
>UniRef50_Q0P3I4 Cluster: Mitochondrion, complete genome; n=1;
Ostreococcus tauri|Rep: Mitochondrion, complete genome -
Ostreococcus tauri
Length = 124
Score = 38.3 bits (85), Expect = 0.090
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 4/125 (3%)
Frame = +1
Query: 67 MNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVV 246
M +L+ S+ N + ++Q++ P SK LTV++ HGYI + R KI V
Sbjct: 1 MKLLTQMFTSLRNGQM-SRKQIVHMPYSKFCWNVLTVLLFHGYIQGMQ----KRDTKIFV 55
Query: 247 NLTGLNKCGVISPRFDVPINDIERWTNLL----PSRQFGYLVLTTSGAIMDHEEARRKHL 414
L + + I + +T P + G L+++TS IM +A +
Sbjct: 56 VLKYIKEQPAIKKLEQISSASQRVYTPYTQLKSPQQGLGLLLVSTSKGIMSSAQALELKV 115
Query: 415 GGKIL 429
GG++L
Sbjct: 116 GGEVL 120
>UniRef50_Q7XYA5 Cluster: Ribosome protein S8; n=1; Griffithsia
japonica|Rep: Ribosome protein S8 - Griffithsia japonica
(Red alga)
Length = 142
Score = 37.9 bits (84), Expect = 0.12
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 11/133 (8%)
Frame = +1
Query: 76 LSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVD---------DHR 228
+SD I N K + + P S+ + + ++ Y+ +F IV DH
Sbjct: 12 ISDLFTRIRNGYA-AKHESIYHPYSRFSLAIVKSLISQNYLRDFRIVPPESPRHPQFDHI 70
Query: 229 AGKIVVNLTGLNKCGVISPRFDVPINDIERWTNLLPSRQ--FGYLVLTTSGAIMDHEEAR 402
+ +L G + R VP + + R LP + G +L+T +M EAR
Sbjct: 71 EIFLSYDLRGKPAIRALR-RVSVPSHRVYRKITQLPLARAGLGTWILSTPNGVMHCTEAR 129
Query: 403 RKHLGGKILGFFF 441
+K LGG+++G F
Sbjct: 130 QKRLGGEVIGEVF 142
>UniRef50_Q6MJ26 Cluster: 30S ribosomal protein S8; n=1;
Bdellovibrio bacteriovorus|Rep: 30S ribosomal protein S8
- Bdellovibrio bacteriovorus
Length = 129
Score = 37.9 bits (84), Expect = 0.12
Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 5/126 (3%)
Frame = +1
Query: 67 MNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVV 246
M+ +S L I NA K + + P SKV +++ G+I F++ D + G + V
Sbjct: 1 MDTISQFLTMIRNAGA-AKHEKVDMPASKVRAGIAQILVNEGFIRSFKVAKDSKQGIMRV 59
Query: 247 NLTGLNKCG-VIS--PRFDVPINDIERWTNLLPSRQ--FGYLVLTTSGAIMDHEEARRKH 411
L G I+ R P + ++ +P+ + G +++TS IM ++A +
Sbjct: 60 YLKYDEAGGHAINNIDRVSRPGRRVYVKSDKIPTVRSGMGMSIISTSKGIMSGKQATEQK 119
Query: 412 LGGKIL 429
LGG++L
Sbjct: 120 LGGELL 125
>UniRef50_Q7M8E6 Cluster: 30S ribosomal protein S8; n=26;
Epsilonproteobacteria|Rep: 30S ribosomal protein S8 -
Wolinella succinogenes
Length = 131
Score = 37.5 bits (83), Expect = 0.16
Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 5/125 (4%)
Frame = +1
Query: 70 NVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVN 249
++++D+L I NA R + +K++V L V + G+I ++++D I V
Sbjct: 4 DIIADSLTRIRNAAMRRLDYTTLY-YAKIVVSILEVFLAKGFIESYKVIDKDGKQSINVV 62
Query: 250 LTGLNKC-GVISP--RFDVPINDIERWTNLLPSRQFGY--LVLTTSGAIMDHEEARRKHL 414
L K VIS R + + + L + GY +V++TS ++ +EEA + ++
Sbjct: 63 LKYDEKGRSVISEIKRISKSGRRVYKGRDELKRFKNGYGTIVVSTSKGVIGNEEAYKANV 122
Query: 415 GGKIL 429
GG+ L
Sbjct: 123 GGEAL 127
>UniRef50_Q0JQL2 Cluster: Os01g0153200 protein; n=4; Oryza sativa|Rep:
Os01g0153200 protein - Oryza sativa subsp. japonica
(Rice)
Length = 1139
Score = 35.9 bits (79), Expect = 0.48
Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +1
Query: 214 VDDHRAGKIVVNLTG-LNKCGVISPRFDVPINDI 312
VDDH++G+I++ G LNK GVIS R DV + +
Sbjct: 912 VDDHKSGEIILEFDGRLNKWGVISFRSDVKVKKL 945
>UniRef50_P56801 Cluster: Chloroplast 30S ribosomal protein S8;
n=118; Viridiplantae|Rep: Chloroplast 30S ribosomal
protein S8 - Arabidopsis thaliana (Mouse-ear cress)
Length = 134
Score = 35.9 bits (79), Expect = 0.48
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 10/134 (7%)
Frame = +1
Query: 70 NVLSDALKSIHNAEKRGKRQVLIRPCS------KVIVK--FLTVMMKHGYIGEFEIVDD- 222
+ ++D + SI NA+ K V I + K++++ F+ + KH ++ ++
Sbjct: 4 DTIADIITSIRNADMNRKGTVRIGSTNITESIVKILLREGFIENVRKHRENNQYFLILTL 63
Query: 223 -HRAGKIVVNLTGLNKCGVISPRFDVPINDIERWTNLLPSRQFGYLVLTTSGAIMDHEEA 399
HR K T LN + P + N +R +L G ++L+TS IM EA
Sbjct: 64 RHRRNKKESYKTILNLKRISRPGLRIYSNS-QRIPRILGG--IGIVILSTSQGIMTDREA 120
Query: 400 RRKHLGGKILGFFF 441
R K +GG+IL + +
Sbjct: 121 RLKRIGGEILCYIW 134
>UniRef50_Q2JIL4 Cluster: 30S ribosomal protein S8; n=93; cellular
organisms|Rep: 30S ribosomal protein S8 - Synechococcus
sp. (strain JA-2-3B'a(2-13)) (Cyanobacteria
bacteriumYellowstone B-Prime)
Length = 136
Score = 35.1 bits (77), Expect = 0.84
Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 8/128 (6%)
Frame = +1
Query: 70 NVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVN 249
+ ++D L I NA V + P +++ V+ + G++ E++ + ++V+
Sbjct: 6 DTIADMLTRIRNATMARHESVAV-PATRMTRSIARVLHEEGFVSEWKEEGEGIQARVVLR 64
Query: 250 LT----GLNKCGVIS--PRFDVPINDIERWTNLLPS--RQFGYLVLTTSGAIMDHEEARR 405
L G N +I+ R P + R LP G +++TS IM EAR+
Sbjct: 65 LKYKGKGRNCRPIINGLKRVSRPGLRVYRNHKELPRVLGGIGIAIISTSNGIMTDREARK 124
Query: 406 KHLGGKIL 429
+ +GG++L
Sbjct: 125 QGIGGEVL 132
>UniRef50_Q06SG0 Cluster: Chloroplast 30S ribosomal protein S8; n=1;
Stigeoclonium helveticum|Rep: Chloroplast 30S ribosomal
protein S8 - Stigeoclonium helveticum (Green alga)
Length = 176
Score = 35.1 bits (77), Expect = 0.84
Identities = 20/48 (41%), Positives = 28/48 (58%)
Frame = +1
Query: 70 NVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEI 213
+ +SD L I NA K+ VLI P +K+ +K ++ K GYI FEI
Sbjct: 4 DTISDMLTRIRNASIVRKKSVLI-PYTKMNLKIAEILEKEGYILSFEI 50
>UniRef50_Q9HWE9 Cluster: 30S ribosomal protein S8; n=46;
Bacteria|Rep: 30S ribosomal protein S8 - Pseudomonas
aeruginosa
Length = 130
Score = 34.7 bits (76), Expect = 1.1
Identities = 30/128 (23%), Positives = 60/128 (46%), Gaps = 4/128 (3%)
Frame = +1
Query: 58 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 237
M + L+D L I NA+ ++ V+ P SK+ V+ GYI +F+I + + +
Sbjct: 1 MSMQDPLADMLTRIRNAQM-AEKTVVSMPSSKLKAAVAKVLKDEGYIADFQISSEVKP-Q 58
Query: 238 IVVNLTGLNKCGVISPRFDVPINDIERWTNL--LPSRQ--FGYLVLTTSGAIMDHEEARR 405
+ + L VI + + ++ ++ LP + G +++T+ +M AR
Sbjct: 59 LSIELKYFEGKPVIEEVKRISRPGLRQYKSVEQLPKVRGGLGVSIVSTNKGVMTDRAARA 118
Query: 406 KHLGGKIL 429
+GG++L
Sbjct: 119 AGVGGEVL 126
>UniRef50_A6DRC4 Cluster: 30S ribosomal protein S8; n=1;
Lentisphaera araneosa HTCC2155|Rep: 30S ribosomal
protein S8 - Lentisphaera araneosa HTCC2155
Length = 130
Score = 34.3 bits (75), Expect = 1.5
Identities = 31/130 (23%), Positives = 63/130 (48%), Gaps = 10/130 (7%)
Frame = +1
Query: 70 NVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVD-DHRAGKIVV 246
+ ++D L + NA + L P SKV +++ + GYI ++++V+ ++ + V
Sbjct: 3 DTIADFLTRLRNAGMANLAE-LNMPSSKVNASISSILKEEGYIADYDVVELENNKKDLKV 61
Query: 247 NL---------TGLNKCGVISPRFDVPINDIERWTNLLPSRQFGYLVLTTSGAIMDHEEA 399
L GL + S R V ++I R L G V++TS +M ++A
Sbjct: 62 QLKYHKGQPLIQGLKRVSKGSCRIFVKADEIPRVRGGL-----GIAVISTSKGMMTGQKA 116
Query: 400 RRKHLGGKIL 429
+ +++GG+++
Sbjct: 117 KSENIGGEVV 126
>UniRef50_O21254 Cluster: Ribosomal protein S8; n=1; Reclinomonas
americana|Rep: Ribosomal protein S8 - Reclinomonas
americana
Length = 128
Score = 33.5 bits (73), Expect = 2.6
Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 3/127 (2%)
Frame = +1
Query: 58 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 237
M ++ + + +I +K V I SK+ L V+ + GYI +FE + +
Sbjct: 1 MTQIQSIQSLMSNIKQGQKNNLLSVDII-YSKLNFDILNVLYEEGYIRDFEKKTNKKNQD 59
Query: 238 IV-VNLTGLNKCGVISPRFDVPINDIERWTNLLPSRQFGYL--VLTTSGAIMDHEEARRK 408
I+ V L N I V I LL G + +L+TS I +EA+R
Sbjct: 60 IINVRLKYYNNTSAIKNIQRVINQHIS--LKLLNQIDLGLVTYILSTSKGIFSGKEAKRL 117
Query: 409 HLGGKIL 429
+LGG +L
Sbjct: 118 NLGGTVL 124
>UniRef50_Q9ZCR9 Cluster: 30S ribosomal protein S8; n=9;
Rickettsia|Rep: 30S ribosomal protein S8 - Rickettsia
prowazekii
Length = 132
Score = 33.5 bits (73), Expect = 2.6
Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 10/128 (7%)
Frame = +1
Query: 76 LSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHR------AGK 237
++D L I NA K V P SK+ L V+ K GYI ++ + A K
Sbjct: 7 VADMLTRIRNAYKSKLINVSF-PSSKIKTSILDVLQKEGYIKDYVTTQKNNISYTEVALK 65
Query: 238 IVVN----LTGLNKCGVISPRFDVPINDIERWTNLLPSRQFGYLVLTTSGAIMDHEEARR 405
VN + +++ R I D++ + N G +L+T +M EA
Sbjct: 66 YSVNGEASICEIHRVSKPGKRVYSAIKDLKGYYN-----NMGIYILSTPYGVMSDREAHI 120
Query: 406 KHLGGKIL 429
K++GG+++
Sbjct: 121 KNVGGEVI 128
>UniRef50_Q6D8U4 Cluster: Putative uncharacterized protein; n=1;
Pectobacterium atrosepticum|Rep: Putative
uncharacterized protein - Erwinia carotovora subsp.
atroseptica (Pectobacterium atrosepticum)
Length = 860
Score = 33.1 bits (72), Expect = 3.4
Identities = 18/39 (46%), Positives = 20/39 (51%)
Frame = -1
Query: 133 GLVFSLAFQHYV*ILRRHSIRSYAPWLRFSSRFVANRID 17
G + SLA Y H SY W RFSS FV+N ID
Sbjct: 347 GKMTSLAGYQYTEDKTEHEADSYQTWRRFSSGFVSNVID 385
>UniRef50_Q76YD0 Cluster: Putative uncharacterized protein; n=1;
Aeromonas phage Aeh1|Rep: Putative uncharacterized
protein - Aeromonas phage Aeh1
Length = 85
Score = 33.1 bits (72), Expect = 3.4
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +1
Query: 61 VRMN-VLSDALKSIHNAEKRGKRQVLIRP-CSKVIVKFLTVMMKHGYIGEFEIVDDHRA 231
+RMN ++++ K I +A +GKR + S + + + + KHGY EF + DHR+
Sbjct: 17 LRMNDLINNISKRIESASVQGKRVTYVYDVASDIRSEVINEITKHGYEVEFVVETDHRS 75
>UniRef50_Q73NX9 Cluster: ISTde2, transposase; n=4; Bacteria|Rep:
ISTde2, transposase - Treponema denticola
Length = 358
Score = 32.7 bits (71), Expect = 4.5
Identities = 22/70 (31%), Positives = 29/70 (41%)
Frame = +1
Query: 145 CSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGLNKCGVISPRFDVPINDIERWT 324
C K K T H Y +E + A K++ + K IS D+ I +E W
Sbjct: 284 CLKEGEKRTTCYYAHPY-SSWERGSNENANKLIRRF--IPKGADISKYSDIQIKQVENWI 340
Query: 325 NLLPSRQFGY 354
N P R FGY
Sbjct: 341 NNYPRRMFGY 350
>UniRef50_P73307 Cluster: 30S ribosomal protein S8; n=9; cellular
organisms|Rep: 30S ribosomal protein S8 - Synechocystis
sp. (strain PCC 6803)
Length = 133
Score = 32.7 bits (71), Expect = 4.5
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 8/136 (5%)
Frame = +1
Query: 58 MVRMNVLSDALKSIHNA--EKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRA 231
M + +SD L I NA + QV P +K+ + V+ G+I ++ +
Sbjct: 1 MASTDTISDMLTRIRNACAVRHSTTQV---PTTKMTLSIAKVLKSEGFIEDYSETGEGIN 57
Query: 232 GKIVVNLT--GLNKCGVISP--RFDVPINDIERWTNLLPS--RQFGYLVLTTSGAIMDHE 393
+V+ L G + +I+ R P + + +P G +++TS IM
Sbjct: 58 KMLVLTLKYKGKTRQPLINTLQRVSKPGLRVYSPSKKIPRVLGGIGIAIVSTSHGIMTDR 117
Query: 394 EARRKHLGGKILGFFF 441
EARR+ +GG+IL + +
Sbjct: 118 EARRQGIGGEILCYIW 133
>UniRef50_Q749V8 Cluster: Putative uncharacterized protein; n=4;
Geobacter|Rep: Putative uncharacterized protein -
Geobacter sulfurreducens
Length = 111
Score = 32.3 bits (70), Expect = 5.9
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +1
Query: 184 KHGYIGEFEIVDDHRAGKIVVNLTGLNKCGVISPR-FDVPINDIERWTNLLPSRQFGY 354
K+G++ + +V HR + + L G K G PR D P D W + PS F Y
Sbjct: 23 KNGFLVDVRMVKRHRQYEAALFLNGRYKPGPPLPRPLDNPSGDTTHWMGVRPSVGFTY 80
>UniRef50_Q6AKK5 Cluster: Sensor protein; n=1; Desulfotalea
psychrophila|Rep: Sensor protein - Desulfotalea
psychrophila
Length = 963
Score = 32.3 bits (70), Expect = 5.9
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +1
Query: 301 INDIERWTNLLPSRQFGYLVLTTSGAIMDHEEARRKHLG---GKILGFFF 441
+N IER+ ++ GY +L GA+++ + +LG G++LG FF
Sbjct: 449 LNSIERFKDIFEQAPIGYQLLDDRGALLEVNQTWLDYLGYKKGEVLGKFF 498
>UniRef50_Q9G903 Cluster: Ribosomal protein S8; n=1; Ochromonas
danica|Rep: Ribosomal protein S8 - Ochromonas danica
Length = 128
Score = 32.3 bits (70), Expect = 5.9
Identities = 36/122 (29%), Positives = 50/122 (40%), Gaps = 4/122 (3%)
Frame = +1
Query: 76 LSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLT 255
L D L S+ NA K V I+ S++I K+L ++ K G I F D +VNL
Sbjct: 5 LIDFLLSLKNASLAKKDFVKIKE-SRLISKYLPILYKEGIIQSFFKKQDSCNSFYIVNLR 63
Query: 256 GLNKCGVIS--PRFDVP--INDIERWTNLLPSRQFGYLVLTTSGAIMDHEEARRKHLGGK 423
V P I I R + + L+L+T IM H + R GG
Sbjct: 64 HFQNKVVTQDIQLISTPSKIKKISRKELISLHLKNKMLILSTPKGIMSHINSIRHKAGGF 123
Query: 424 IL 429
I+
Sbjct: 124 II 125
>UniRef50_Q3S2A0 Cluster: Ribosomal protein S8; n=1; Thalassiosira
pseudonana|Rep: Ribosomal protein S8 - Thalassiosira
pseudonana (Marine diatom)
Length = 128
Score = 32.3 bits (70), Expect = 5.9
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Frame = +1
Query: 121 KRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVD-DHRAGKIVVNLTG----LNKCGVIS- 282
+R + + +K+I+ FL ++ G+I ++I D KI + +N IS
Sbjct: 19 RRNFMYQQKTKLIIAFLDILWDEGFILGYKIYSADSNILKIFLKYKNGNPVINSVKPISK 78
Query: 283 PRFDVPINDIERWTNLLPSRQFGYLVLTTSGAIMDHEEARRKHLGGKIL 429
P + + + W L S++ ++LTTS +M E +R +GGK L
Sbjct: 79 PSQQIYYSVSQLWK--LDSKK-NLIILTTSKGLMTVNECKRAQIGGKPL 124
>UniRef50_Q9TAI6 Cluster: Ribosomal protein S8; n=1; Cafeteria
roenbergensis|Rep: Ribosomal protein S8 - Cafeteria
roenbergensis
Length = 131
Score = 31.9 bits (69), Expect = 7.8
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
Frame = +1
Query: 67 MNVLSDALKSIHNAEKRGKRQVLIR-PCSKVIVKFLTVMMKHGYIGEF-EIVDDHRAGKI 240
M +L+ + I A+K G + + I S + FL +++K G+I F EI + G +
Sbjct: 1 MILLNHLITVIKLAKKSGNKNIFIGIKASFLCYDFLRILLKQGFIKNFREIKQKRKEGYV 60
Query: 241 VVNLTGLNKCGVISPRFDVPINDIERWTNL--LPSRQFG---YLVLTTSGAIMDHEEARR 405
+ +I V N + + L ++ G +++LT G + D E AR
Sbjct: 61 IEFRFDERGNNIIKNIQFVASNQVFSTVKISALWKKEKGQGLFILLTPQGLLTDIE-ARN 119
Query: 406 KHLGGKIL 429
++GGK++
Sbjct: 120 SNVGGKLV 127
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 440,020,489
Number of Sequences: 1657284
Number of extensions: 8178242
Number of successful extensions: 16950
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 16623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16916
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 27710252790
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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