Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12a17f
         (484 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823          213   5e-56
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419...   202   2e-52
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289          125   2e-29
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286...    36   0.017
11_01_0526 - 4140853-4141017,4141416-4141619                           29   2.0  

>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
          Length = 130

 Score =  213 bits (521), Expect = 5e-56
 Identities = 101/130 (77%), Positives = 116/130 (89%), Gaps = 2/130 (1%)
 Frame = +1

Query: 58  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 237
           MVR++VL+DALK+++NAEKRGKRQVLIRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRVSVLNDALKTMYNAEKRGKRQVLIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60

Query: 238 IVVNLTG-LNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGAIMDHEEARRKH 411
           IVV L G LNKCGVISPRFDV + +IE WT  LLPSRQFGY+VLTTS  IMDHEEARRK+
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 412 LGGKILGFFF 441
           +GGK+LGFF+
Sbjct: 121 VGGKVLGFFY 130


>02_03_0219 +
           16541350-16541482,16541605-16541765,16541863-16541940,
           16543176-16543445
          Length = 213

 Score =  202 bits (492), Expect = 2e-52
 Identities = 97/126 (76%), Positives = 111/126 (88%), Gaps = 2/126 (1%)
 Frame = +1

Query: 58  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 237
           MVR++VL+DALK+++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRVSVLNDALKTMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60

Query: 238 IVVNLTG-LNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGAIMDHEEARRKH 411
           IVV L G LNKCGVISPRFDV + +IE WT  LLPSRQFGY+VLTTS  IMDHEEARRK+
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 412 LGGKIL 429
           +GGK L
Sbjct: 121 VGGKEL 126


>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
          Length = 129

 Score =  125 bits (301), Expect = 2e-29
 Identities = 56/124 (45%), Positives = 90/124 (72%), Gaps = 2/124 (1%)
 Frame = +1

Query: 73  VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 252
           +L+DAL+++ NAE+RGK   L++P S V+V FL +M   GYI +FE++D HR GKI V L
Sbjct: 5   ILNDALRTMVNAERRGKATALLQPISGVMVSFLNIMKHRGYIKKFEVIDPHRVGKINVEL 64

Query: 253 TG-LNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGAIMDHEEARRKHLGGKI 426
            G +  C  ++ R D+   +IE++   +LP+RQ+GY+V+TT   ++DHEEA ++++GG++
Sbjct: 65  HGRIKDCKALTYRQDIRAKEIEQYRVRMLPTRQWGYVVITTPNGVLDHEEAIKQNVGGQV 124

Query: 427 LGFF 438
           LG+F
Sbjct: 125 LGYF 128


>01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,
            2863431-2863516,2863648-2866272
          Length = 1139

 Score = 35.9 bits (79), Expect = 0.017
 Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = +1

Query: 214  VDDHRAGKIVVNLTG-LNKCGVISPRFDVPINDI 312
            VDDH++G+I++   G LNK GVIS R DV +  +
Sbjct: 912  VDDHKSGEIILEFDGRLNKWGVISFRSDVKVKKL 945


>11_01_0526 - 4140853-4141017,4141416-4141619
          Length = 122

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 226 RAGKIVVNLTGLNKCGVISPRFDVPINDIERWT 324
           R   I+ N+  LNKCGVI+P     I+D+   T
Sbjct: 79  RVHSIIENI--LNKCGVIAPNLPTKIDDLSHRT 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,783,905
Number of Sequences: 37544
Number of extensions: 224626
Number of successful extensions: 473
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)