Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12a16r
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    36   0.006
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    31   0.13 
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    25   8.4  

>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 35.9 bits (79), Expect = 0.006
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 719 PNPNKFDPDNFLPERSANRHYYAFVPFSAGPRSCVGRKYAM 597
           P P  F+PD + P   A +    ++ F  GP  C+G++YA+
Sbjct: 426 PEPETFNPDRWAPNGLAEQSPKNWMVFGNGPHVCLGQRYAV 466


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -2

Query: 650 FVPFSAGPRSCVGRKYAMLKLKVILSTILRNF 555
           ++PF AG   C+G ++A + L  I+S  + ++
Sbjct: 432 YLPFGAGRHRCIGEQFAYMHLSTIISKFVHDY 463


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +2

Query: 623 FLVQLKKARTHNNVCWRNVPEGSCQGQICLDWVT 724
           F    K  ++H N  + N   G C+  +C D +T
Sbjct: 309 FYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLT 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,443,260
Number of Sequences: 5004
Number of extensions: 41993
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)