Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12a16f
(660 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 28 1.4
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr... 27 3.2
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito... 26 4.2
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 5.5
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 5.5
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 7.3
SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces pom... 25 7.3
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 7.3
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po... 25 7.3
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 9.7
SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces... 25 9.7
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.9 bits (59), Expect = 1.4
Identities = 22/69 (31%), Positives = 35/69 (50%)
Frame = +3
Query: 276 NSSVDLLTSSET*FRKALTTITNPSLRSG*DLVSSSFCTILATWKSS*VVTFTSIKLRNT 455
+SS + TSS + F ++TTI++ S SS +IL++ SS T SI +T
Sbjct: 540 SSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSST 599
Query: 456 VSSNHGSET 482
S+ + T
Sbjct: 600 SSTFSSAST 608
>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 327
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +2
Query: 470 WLGNGLLISTGQKWRSHRKLIAPTFHLNVLKSFIDLFNANSRAVV 604
W+GNG T + + + I T HL S +D + N+ V+
Sbjct: 67 WIGNGHAAETTLYFPASHQQIQLTLHLENQNSIVDSIHINADTVL 111
>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
pyrophosphate synthase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 920
Score = 26.2 bits (55), Expect = 4.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 284 GGSADIFRNIVQKSADYD 337
GG +FR + KS+DYD
Sbjct: 216 GGGRKLFRKVANKSSDYD 233
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 402 TWKSS*VVTFTSIKLRNTVSSNHGSETVFLSVLVKNGGLIVNLSPPHS 545
T+ SS V + + + +++H S T F+ GGL NLS P S
Sbjct: 96 TFGSSNFVPYNLLSNTPSFTTSHSSSTTFVPPATMGGGL-NNLSSPSS 142
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 89 SYTNAENVVPTSTFSAINLFYVLLVPAVILWYAYWRMSRRRLYELADKLN 238
S +N NV +T S I LF+ + + + +W+ R L L D+L+
Sbjct: 252 SLSNLVNVWLKTTRSLIKLFHDQISKTALEEFNFWQFYYRSLSRLNDQLH 301
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 25.4 bits (53), Expect = 7.3
Identities = 14/54 (25%), Positives = 29/54 (53%)
Frame = +2
Query: 299 IFRNIVQKSADYDHESVVKIWIGPRLLVFLYDPRDVEVILSSHVYIDKAEEYRF 460
+ ++++ K+ +E+ V+ + +L+ DVE + S +YID E+Y F
Sbjct: 485 VMQSLLSKATSATNENSVRAFWAFMVLL----KSDVETVDSLEMYIDSLEQYSF 534
>SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 82 QHELYKRRKCSAYKHVFCDQPLLCVTC 162
Q ELY R + S Y HV D + +C
Sbjct: 111 QTELYPRSQISVYLHVLQDDGAVMASC 137
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 441 KLRNTVSSNHGSETVFLSVLVKNGGL 518
K+++ ++S HG TV S+L+ N G+
Sbjct: 55 KVKDYIAS-HGGHTVITSILIANNGI 79
>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 622
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 529 YRPHIPSERFEEFHRLIQRQLKSCCGQT*KGS 624
+R +PS+ + + LI R+ +CC KG+
Sbjct: 392 HRSALPSQDHWKVYELITRRFLACCSDNAKGA 423
>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -2
Query: 218 HTTAALTFASRRTRGLRPAQVTHRR 144
HT AA+ A RG R V HR+
Sbjct: 42 HTAAAVKEAFSENRGFRTCHVCHRK 66
>SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 348
Score = 25.0 bits (52), Expect = 9.7
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = -3
Query: 517 RPPFLTSTDKKTVSEPWFEETV--FLSFIDVNVTTQDDFHVARIVQKD 380
RPPF+T D T W + F+S I NV T H Q+D
Sbjct: 225 RPPFITQCDTATGDNYWAGTYMGDFVSNI-TNVLTNSTGHYCTTQQED 271
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,560,416
Number of Sequences: 5004
Number of extensions: 51615
Number of successful extensions: 168
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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