Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12a14r
(711 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical ... 32 0.47
Z83223-4|CAB05716.2| 534|Caenorhabditis elegans Hypothetical pr... 31 0.61
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 31 0.61
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 31 0.61
U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein. 31 0.61
U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein. 31 0.61
AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell... 31 0.61
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 31 0.81
Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical pr... 31 0.81
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 31 0.81
AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical ... 31 1.1
AC006696-8|AAF39989.1| 120|Caenorhabditis elegans Hypothetical ... 30 1.9
AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical ... 29 3.3
Z74046-1|CAA98556.2| 178|Caenorhabditis elegans Hypothetical pr... 29 4.3
U97196-12|AAB52456.2| 564|Caenorhabditis elegans Hypothetical p... 29 4.3
Z37983-4|CAA86057.1| 803|Caenorhabditis elegans Hypothetical pr... 28 5.7
L13200-7|AAA28189.1| 206|Caenorhabditis elegans Prion-like-(q/n... 28 5.7
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr... 28 7.6
U80453-9|AAT81206.1| 432|Caenorhabditis elegans Hypothetical pr... 28 7.6
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p... 28 7.6
U46675-1|AAB52645.2| 524|Caenorhabditis elegans Hypothetical pr... 28 7.6
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep... 28 7.6
>AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical
protein Y37H9A.3 protein.
Length = 792
Score = 31.9 bits (69), Expect = 0.47
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = -2
Query: 269 SHHPECPHPRSSQCSSDGEVGPQVVPEARPQLPTHTAQVEEASPQATPPPTVDPDR 102
+HHP P P Q + E P +P+ + P TA A+P AT PT DP +
Sbjct: 215 AHHP--PAPPIRQAAHAAESSPPPIPQRKSSAPAPTA----AAPPATKEPT-DPKK 263
>Z83223-4|CAB05716.2| 534|Caenorhabditis elegans Hypothetical
protein E01G4.4 protein.
Length = 534
Score = 31.5 bits (68), Expect = 0.61
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = -1
Query: 681 YYNPRAVGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQPE 502
Y NP+A G + +Q + P Y P R++Q +Y P+Q+ + Y QQ +
Sbjct: 27 YQNPQAGYG----YNNQQQQQQGRPQQYAGYPPQRQQQQYNMNAYAPRQQQQQQYQQQQQ 82
Query: 501 N 499
N
Sbjct: 83 N 83
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 31.5 bits (68), Expect = 0.61
Identities = 18/52 (34%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Frame = +1
Query: 109 GSTVGGGVACGDASSTCAVCVGNCGRASGTTC-GPTSPSEEHWEERGCGHSG 261
G GGG CG C G CG G C G +S GCG G
Sbjct: 108 GGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGG 159
Score = 31.5 bits (68), Expect = 0.61
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -2
Query: 251 PHPRSSQCSSDG-EVGPQVVPEARPQLPTHTAQVEEASPQATP 126
P P ++ SS G G + PEA P P+ EA+P+A P
Sbjct: 456 PAPEAAPASSGGYSGGSEAAPEAAPAAPSGGYSGSEAAPEAAP 498
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 224 SDGEVGPQVVPEARPQLPTHTAQVEEASPQATP 126
S G G + PEA P P+ EA+P+A P
Sbjct: 484 SGGYSGSEAAPEAAPAAPSGGYSGSEAAPEAAP 516
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 224 SDGEVGPQVVPEARPQLPTHTAQVEEASPQATP 126
S G G + PEA P P+ EA+P+A P
Sbjct: 502 SGGYSGSEAAPEAAPAAPSGGYSGSEAAPEAAP 534
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 224 SDGEVGPQVVPEARPQLPTHTAQVEEASPQATP 126
S G G + PEA P P+ EA+P+A P
Sbjct: 520 SGGYSGSEAAPEAAPAAPSGGYSGSEAAPEAAP 552
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 224 SDGEVGPQVVPEARPQLPTHTAQVEEASPQATP 126
S G G + PEA P P+ EA+P+A P
Sbjct: 538 SGGYSGSEAAPEAAPAAPSGGYSGSEAAPEAAP 570
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Frame = +1
Query: 109 GSTVGGGVACGDASSTCAVCVGNCGRASGTTCGPTSPSEEHWEERGC--GHSGWC 267
G GGG CG C G CG G CG GC G SG C
Sbjct: 94 GGGCGGGGGCGGGGGGCGGGGGGCG-GGGGGCGGGGGGCGGGGGGGCGGGSSGGC 147
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 31.5 bits (68), Expect = 0.61
Identities = 18/52 (34%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Frame = +1
Query: 109 GSTVGGGVACGDASSTCAVCVGNCGRASGTTC-GPTSPSEEHWEERGCGHSG 261
G GGG CG C G CG G C G +S GCG G
Sbjct: 108 GGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGG 159
Score = 31.5 bits (68), Expect = 0.61
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -2
Query: 251 PHPRSSQCSSDG-EVGPQVVPEARPQLPTHTAQVEEASPQATP 126
P P ++ SS G G + PEA P P+ EA+P+A P
Sbjct: 456 PAPEAAPASSGGYSGGSEAAPEAAPAAPSGGYSGSEAAPEAAP 498
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 224 SDGEVGPQVVPEARPQLPTHTAQVEEASPQATP 126
S G G + PEA P P+ EA+P+A P
Sbjct: 484 SGGYSGSEAAPEAAPAAPSGGYSGSEAAPEAAP 516
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 224 SDGEVGPQVVPEARPQLPTHTAQVEEASPQATP 126
S G G + PEA P P+ EA+P+A P
Sbjct: 502 SGGYSGSEAAPEAAPAAPSGGYSGSEAAPEAAP 534
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 224 SDGEVGPQVVPEARPQLPTHTAQVEEASPQATP 126
S G G + PEA P P+ EA+P+A P
Sbjct: 520 SGGYSGSEAAPEAAPAAPSGGYSGSEAAPEAAP 552
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 224 SDGEVGPQVVPEARPQLPTHTAQVEEASPQATP 126
S G G + PEA P P+ EA+P+A P
Sbjct: 538 SGGYSGSEAAPEAAPAAPSGGYSGSEAAPEAAP 570
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Frame = +1
Query: 109 GSTVGGGVACGDASSTCAVCVGNCGRASGTTCGPTSPSEEHWEERGC--GHSGWC 267
G GGG CG C G CG G CG GC G SG C
Sbjct: 94 GGGCGGGGGCGGGGGGCGGGGGGCG-GGGGGCGGGGGGCGGGGGGGCGGGSSGGC 147
>U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 31.5 bits (68), Expect = 0.61
Identities = 20/69 (28%), Positives = 24/69 (34%), Gaps = 6/69 (8%)
Frame = -2
Query: 272 TSHHPECPHPRSSQCSSDGEVGPQVVPE-ARPQLPTHTAQVEEASPQAT-----PPPTVD 111
T+H P P S CS V P + P + + SP T PPP
Sbjct: 216 TTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESRQCRKRSLSPSTTSSTTAPPPPPQ 275
Query: 110 PDRMKNCKP 84
P K KP
Sbjct: 276 PPTKKGMKP 284
>U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 31.5 bits (68), Expect = 0.61
Identities = 20/69 (28%), Positives = 24/69 (34%), Gaps = 6/69 (8%)
Frame = -2
Query: 272 TSHHPECPHPRSSQCSSDGEVGPQVVPE-ARPQLPTHTAQVEEASPQAT-----PPPTVD 111
T+H P P S CS V P + P + + SP T PPP
Sbjct: 216 TTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESRQCRKRSLSPSTTSSTTAPPPPPQ 275
Query: 110 PDRMKNCKP 84
P K KP
Sbjct: 276 PPTKKGMKP 284
>AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell
lineage protein 1 protein.
Length = 441
Score = 31.5 bits (68), Expect = 0.61
Identities = 20/69 (28%), Positives = 24/69 (34%), Gaps = 6/69 (8%)
Frame = -2
Query: 272 TSHHPECPHPRSSQCSSDGEVGPQVVPE-ARPQLPTHTAQVEEASPQAT-----PPPTVD 111
T+H P P S CS V P + P + + SP T PPP
Sbjct: 216 TTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESRQCRKRSLSPSTTSSTTAPPPPPQ 275
Query: 110 PDRMKNCKP 84
P K KP
Sbjct: 276 PPTKKGMKP 284
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 31.1 bits (67), Expect = 0.81
Identities = 17/51 (33%), Positives = 17/51 (33%)
Frame = +1
Query: 109 GSTVGGGVACGDASSTCAVCVGNCGRASGTTCGPTSPSEEHWEERGCGHSG 261
G GGG CG C G CG G G P GCG G
Sbjct: 76 GGGCGGGGGCGGGGGGCGGGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGG 126
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +1
Query: 109 GSTVGGGVACGDASSTCAVCVGNCGRASGTTCG 207
G GGG CG C G CG G CG
Sbjct: 147 GGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCG 179
>Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical
protein C27H6.1 protein.
Length = 1657
Score = 31.1 bits (67), Expect = 0.81
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = -2
Query: 251 PHPRSSQCSSDGEVGPQVVPEARPQLPTHTAQVEEASPQATPPPTVDP 108
P P +S SS G P P ARP+ P +A+ PPP P
Sbjct: 673 PTPEAS--SSTGTSAPARPPPARPEAPKKDETAVDAAAPPRPPPAARP 718
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 31.1 bits (67), Expect = 0.81
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +1
Query: 109 GSTVGGGVACGDASSTCAVCVGNCGRASGTTCGPTSPSEEH 231
G GGG +CG ++ C G G S + C P + + H
Sbjct: 2136 GGCSGGGNSCGGGCNSGGSCGGGGGGCSSSCCQPQTSATSH 2176
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 549 YVPQQENEVYYPQQPENPIFSPTQATELADPTEKIE 442
YVPQ+ P PE +P+Q + +PT IE
Sbjct: 1812 YVPQETQAPIAPSNPEPVQPNPSQTVSIPEPTGNIE 1847
>AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical
protein R148.3a protein.
Length = 1115
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Frame = -2
Query: 275 MTSHHPECPHPRSSQCSSDGEVGPQVVPEARP--QLPTHTAQV--EEASPQA--TPPPTV 114
+T+ P P P + + + P PE P Q+P TAQ+ E A P+A P PT
Sbjct: 372 LTTPPPPAPPPPAPAVPEEAQA-PTPAPEEAPEAQIPAETAQIPPENAVPEAPEEPAPTT 430
Query: 113 DP 108
P
Sbjct: 431 TP 432
>AC006696-8|AAF39989.1| 120|Caenorhabditis elegans Hypothetical
protein W08E12.2 protein.
Length = 120
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Frame = +1
Query: 106 SGSTVGGGVACGDASSTCAVCVG-NCGRASGTTCGP 210
S GGG G C C G NCG +G CGP
Sbjct: 17 SAQCFGGGCGGGCFGGNCGGCSGNNCG-CNGNNCGP 51
>AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical
protein R148.3b protein.
Length = 1130
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Frame = -2
Query: 260 PECPHPRSSQCSSDGEVGPQVVPEARP--QLPTHTAQV--EEASPQA--TPPPTVDP 108
P P P + + + P PE P Q+P TAQ+ E A P+A P PT P
Sbjct: 389 PPAPPPPAPAVPEEAQA-PTPAPEEAPEAQIPAETAQIPPENAVPEAPEEPAPTTTP 444
>Z74046-1|CAA98556.2| 178|Caenorhabditis elegans Hypothetical
protein ZC116.1 protein.
Length = 178
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -1
Query: 693 YYNPYYN--PRAVGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVY 520
YY PYY P A G + +Q +A A ++ Q A + QQ+ + Y
Sbjct: 25 YYTPYYYYYPTAAVAGTTG-VAQQTQAGGASQQAYAQQQPQQNQQYAQGT---QQQQQQY 80
Query: 519 YPQQPE 502
YPQQ +
Sbjct: 81 YPQQTQ 86
>U97196-12|AAB52456.2| 564|Caenorhabditis elegans Hypothetical
protein B0207.1 protein.
Length = 564
Score = 28.7 bits (61), Expect = 4.3
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Frame = -1
Query: 687 NPYYNPRAVGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYY--P 514
NP NP + G+ P Q P V P R + + V Q + V P
Sbjct: 63 NPVQNPNKLSTGLPPMTMMLPPTVQEPLPTPVKTPPLPRPP-GNLNPVQQPQIPVQRTPP 121
Query: 513 QQPENPIFSPTQATELA 463
Q P P+ P Q T++A
Sbjct: 122 QCPPPPVPHPPQITQMA 138
>Z37983-4|CAA86057.1| 803|Caenorhabditis elegans Hypothetical
protein B0393.4 protein.
Length = 803
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -2
Query: 194 PEARPQLPTHTAQVEEASPQATPPP 120
P P L T T +E+ P TPPP
Sbjct: 191 PSEPPLLTTPTTPIEDPEPYVTPPP 215
>L13200-7|AAA28189.1| 206|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 96
protein.
Length = 206
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 543 PQQENEVYYPQQPENPIFSPTQATELA 463
PQQ+ Y PQQP +PI A +A
Sbjct: 6 PQQQQPGYQPQQPSHPIVGAGAAPTMA 32
>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
protein F12F6.6 protein.
Length = 1126
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -1
Query: 627 PEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQPENPIFSPT 481
P++ QAPS +Q A T +PQ + P QP + I PT
Sbjct: 121 PQSVQAPSATPAGPLQAMQQAPAPTPGIPQMNQGAHLPPQP-HQIHQPT 168
>U80453-9|AAT81206.1| 432|Caenorhabditis elegans Hypothetical
protein C23H3.9d protein.
Length = 432
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/52 (34%), Positives = 21/52 (40%)
Frame = -2
Query: 689 TILTTTPELWAVVWPRSCTASPKPHRRLQRARCTYLIVAARPLPIPATYRNK 534
T TTPE PRS + +P +RL T AA PIP K
Sbjct: 59 TTTETTPEAPTTSEPRSHSRDARPTQRLPLTWSTVTPTAAPSQPIPTATSRK 110
>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
protein 68 protein.
Length = 5079
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 206 PQVVPEARPQLPTHTAQVEEASPQATPPPT 117
P VP RP+ P + E+ Q T PPT
Sbjct: 4536 PDFVPPERPETPETVLEEEKPLNQETSPPT 4565
>U46675-1|AAB52645.2| 524|Caenorhabditis elegans Hypothetical
protein F35A5.4 protein.
Length = 524
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -2
Query: 197 VPEARPQ-LPTHTAQVEEASPQATPPPTVDPDRMKNCKP 84
+P+ P+ LPT Q++ + P P P D M +C P
Sbjct: 234 IPQCMPRCLPTCIQQIQISVPLPPPAPRCDSMCMPSCSP 272
>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
protein.
Length = 5071
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 206 PQVVPEARPQLPTHTAQVEEASPQATPPPT 117
P VP RP+ P + E+ Q T PPT
Sbjct: 4528 PDFVPPERPETPETVLEEEKPLNQETSPPT 4557
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,205,103
Number of Sequences: 27780
Number of extensions: 327909
Number of successful extensions: 1509
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1501
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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