Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12a14r
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.8  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   5.0  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   5.0  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   5.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   5.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.7  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 16  QKNYNNNIFYTK 51
           + NYN+N FY+K
Sbjct: 135 ENNYNDNYFYSK 146


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 22  NYNNNIFYTKQLIVSI 69
           NYNNN  Y K+L  +I
Sbjct: 95  NYNNNNNYNKKLYYNI 110


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 22  NYNNNIFYTKQLIVSI 69
           NYNNN  Y K+L  +I
Sbjct: 333 NYNNNNNYNKKLYYNI 348


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -2

Query: 194 PEARPQLPTHTAQVEEASPQATPPPTV 114
           P    Q+P   A ++++ P  +  PTV
Sbjct: 106 PSYSMQVPQQGASIDDSDPDPSSEPTV 132


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -2

Query: 194 PEARPQLPTHTAQVEEASPQATPPPTV 114
           P    Q+P   A ++++ P  +  PTV
Sbjct: 554 PSYSMQVPQQGASIDDSDPDPSSEPTV 580


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 582 DRRRQTLADTSYVPQQENEVYYP 514
           D   QT++ T+ V Q+E E Y P
Sbjct: 338 DLTTQTVSTTADVLQEEEEEYSP 360


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
 Frame = -1

Query: 582  DRRRQTLADTSYVPQQENEV--YYPQQPENPIFSPTQATELADPTEK 448
            DR R+TL      PQQ+ +      QQ +     P      A PT+K
Sbjct: 1437 DRDRKTLTSAPQQPQQQQQQQQQQQQQQQQLNHYPDLHNLYAVPTDK 1483


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,116
Number of Sequences: 438
Number of extensions: 4742
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)