Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12a14f
         (577 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)                  36   0.024
SB_34512| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.67 
SB_4880| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.1  
SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)                      29   2.7  
SB_2243| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_31799| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_39417| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_11980| Best HMM Match : dCMP_cyt_deam (HMM E-Value=1.2e-22)         27   8.3  

>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
          Length = 2123

 Score = 35.9 bits (79), Expect = 0.024
 Identities = 30/102 (29%), Positives = 36/102 (35%)
 Frame = +1

Query: 151  PTIPTMETWTPFPTARAIVTEEAWS*AVTTILTTTPELWAVVWPRSCTASPKPHRRLQRA 330
            PT  T  T TP  TA    T E  +   TT  TTTPE            + KP     + 
Sbjct: 1772 PTTTTTTTTTPETTAPRTTTPETTTPETTTPRTTTPE------------TTKPRTTTPKT 1819

Query: 331  RCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSSAPLKRP 456
                   AA+  P+P T+        T  N  T   A  K P
Sbjct: 1820 TTPKKTTAAKKAPLPVTHATTSHAPSTTENPTTARPATTKAP 1861


>SB_34512| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1080

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 26/61 (42%), Positives = 33/61 (54%)
 Frame = +3

Query: 297 QPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQPENPIFSPTQATELADPTE 476
           Q E A A S   V +P+R  QT +  S  P+Q N+V  PQ  E P  S T A  LA+P E
Sbjct: 625 QHELAVADSP-VVCLPER--QTHSGESATPEQTNQVVEPQM-EEPQGS-TSAQHLAEPDE 679

Query: 477 K 479
           +
Sbjct: 680 Q 680


>SB_4880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 961

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 189 YGSGDSNRGGLVMSRYYNPYYNPRAVGGGMAAFMYRQPEAAQ 314
           YG    + G  V++ Y  P Y   A  GG  A ++ QP A +
Sbjct: 142 YGRNAPHPGSTVLTVYRRPTYRAIATPGGACATLFLQPGAGR 183


>SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)
          Length = 1776

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 26/85 (30%), Positives = 33/85 (38%)
 Frame = +1

Query: 151 PTIPTMETWTPFPTARAIVTEEAWS*AVTTILTTTPELWAVVWPRSCTASPKPHRRLQRA 330
           P   T  T TP  T     T E  +   TT  TTTPE      P+  TA+ K    +  A
Sbjct: 181 PETTTPRTTTPVTTTPRTTTPETTTPETTTPRTTTPE---TTTPKKTTAAKKAPLPVTHA 237

Query: 331 RCTYLIVAARPLPIPATYRNKKTKS 405
             ++   A      P T R   TK+
Sbjct: 238 TTSH---APSTTENPTTARPATTKA 259


>SB_2243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 21/56 (37%), Positives = 25/56 (44%)
 Frame = -3

Query: 380 VAGIGKGLAATIRYVHLAR*RRLCGFGLAVHERGHTTAHSSGVVVRIVVTAHDQAS 213
           VAG+      T  Y H AR R   G+G A   RG  T H  GV  R   T +  A+
Sbjct: 12  VAGVWTRSTVT-GYRHAARSR---GYGHAARSRGIDTQHGHGVWTRSTFTGYRHAA 63


>SB_31799| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 960

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
 Frame = +1

Query: 262 LWAVVWPRSCTASPKPHRRLQRARCTYLIV--AARPLPIPATYRN 390
           +W + W  S    P+ HRR +  R  + +      P   P T +N
Sbjct: 703 VWTLAWTVSTPLIPQEHRRTEHRRTVWTLAWYGVHPTHTPGTQKN 747


>SB_39417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 246

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 371 IGKGLAATIRYVHLAR*RRLCGFG 300
           I  G+A  ++ V L R RRLCG G
Sbjct: 91  ISPGMANRVQSVRLGRRRRLCGLG 114


>SB_11980| Best HMM Match : dCMP_cyt_deam (HMM E-Value=1.2e-22)
          Length = 432

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 276 MAAFMYRQPEAAQAPSTGQVYIPDRRRQTLAD 371
           +A FM   P A   P+TG VY+ D  R    D
Sbjct: 50  LALFMRESPWADGEPTTGAVYVQDNGRLLSVD 81


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,762,760
Number of Sequences: 59808
Number of extensions: 395988
Number of successful extensions: 1147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)