Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12a13r
         (755 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79695-2|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AL117206-10|CAB60452.2|  258|Caenorhabditis elegans Hypothetical...    28   8.2  

>Z79695-2|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical protein
            F27D4.6 protein.
          Length = 1008

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +2

Query: 164  VYCFFFYKMEATNFRYTFYNINRYFNTTIYKNLNLFGMVLSSLLCYEE 307
            V CF +Y   +  F+  +  +   FN    KN+N  G   +  L YEE
Sbjct: 875  VNCFCYYCPNSIEFKSIWEVVQHVFNGVHMKNINYIG-TSADFLYYEE 921


>AL117206-10|CAB60452.2|  258|Caenorhabditis elegans Hypothetical
           protein Y67A10A.2 protein.
          Length = 258

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 170 CFFFYKMEATNFRYTFYNIN-RYFNTTI 250
           C   + +EATNFRY FY  +   F TTI
Sbjct: 178 CLSTFIIEATNFRYNFYTASGSDFVTTI 205


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,132,388
Number of Sequences: 27780
Number of extensions: 260214
Number of successful extensions: 536
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)