Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12a13f
(668 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0004 - 133130-133897 33 0.27
07_03_0305 - 16475127-16476017,16476058-16478067 31 0.83
06_01_1159 - 9852316-9852441,9852743-9852838,9852912-9852977,985... 31 0.83
09_04_0676 - 19383757-19383890,19384308-19384415,19384493-193846... 30 1.9
12_02_0156 - 14532000-14532098,14532669-14534330,14534445-145346... 29 2.5
07_01_0297 - 2156960-2157736 29 3.3
06_03_0218 + 18219956-18220555 28 5.9
01_06_0630 - 30723903-30724496 28 5.9
10_08_0785 - 20536265-20537032 28 7.7
10_05_0052 - 8586577-8588007 28 7.7
>09_01_0004 - 133130-133897
Length = 255
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -3
Query: 660 RRQQTCDEHQYSGGGDVAGTALPAADDARP 571
RR++T D + +GGG+V T L A +DA P
Sbjct: 102 RRRRTGDAAEAAGGGEVVATPLDAGEDASP 131
>07_03_0305 - 16475127-16476017,16476058-16478067
Length = 966
Score = 31.1 bits (67), Expect = 0.83
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 415 PVETHCSNVDYFIPDENNETKGLSDDAMNRLHMARS-TVALFIVAFLTLFIAFW 573
P+ +CS +PD +E K LSD L M V L++V LF+ W
Sbjct: 887 PLSRNCSESSKLLPDAVDEDKSLSDGVFLYLGMGIGWVVGLWVVLCTFLFMQRW 940
>06_01_1159 -
9852316-9852441,9852743-9852838,9852912-9852977,
9853091-9853180,9853262-9853373,9853515-9853598,
9853864-9853940,9854823-9854873,9854924-9855031,
9855703-9855774,9856952-9857011,9857808-9857876,
9858005-9858088,9858212-9858295,9859106-9859198,
9859930-9860030,9861155-9861264,9863058-9863104,
9863693-9863778,9863940-9864012,9864454-9864540,
9864650-9865301,9866164-9867182,9867702-9867797
Length = 1180
Score = 31.1 bits (67), Expect = 0.83
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -1
Query: 593 QQPTTPVQKAMNNVKNATMNNATVDRAICSLFIASSERPLVSLF 462
++ T+ K + K + +NAT IC++ S ++PLV L+
Sbjct: 248 EKKTSSRSKKSSKAKESAASNATAKAEICTMTSVSEQKPLVPLY 291
>09_04_0676 -
19383757-19383890,19384308-19384415,19384493-19384679,
19384937-19385143
Length = 211
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +1
Query: 313 DSLNNKYFFYTRTRGLFRICYPKERPPTVEIYLSPVETHCSNVDYFIPDEN 465
D +++K+ F RG+ R C+ + P + + +H S D DE+
Sbjct: 83 DKISDKFEFIVHRRGVHRFCFTNKSPYHETVDFDVLVSHFSYYDQHAKDEH 133
>12_02_0156 -
14532000-14532098,14532669-14534330,14534445-14534660,
14534730-14534907,14535065-14535276
Length = 788
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +3
Query: 225 RQLALYRSKAI*HSVIRCGELGGQLAGHPRQLEQQIFLLHQNERSFPHLLPERKT 389
+ + L+RS A+ H +I G +++ L +Q + H +FPHL +RKT
Sbjct: 733 KAVVLFRSVALRHMLIMPKFQGPEISPIVGILTRQDLIAHNILGAFPHLASKRKT 787
>07_01_0297 - 2156960-2157736
Length = 258
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 386 DRLQLKSTCRRWRLTA 433
DRL+ ++ CRRWRL A
Sbjct: 51 DRLRFRAVCRRWRLAA 66
>06_03_0218 + 18219956-18220555
Length = 199
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 654 QQTCDEHQYSGGGDVAGTALPAADDARP 571
++T DE Q +G G+V T L +DA P
Sbjct: 48 RRTGDEQQPAGDGEVVATPLDTGEDASP 75
>01_06_0630 - 30723903-30724496
Length = 197
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -2
Query: 355 LSFWCRRNICCSSCRG*PASCPPSSP 278
L W RRN C CR P P ++P
Sbjct: 150 LDAWLRRNASCPVCRSSPIPTPVATP 175
>10_08_0785 - 20536265-20537032
Length = 255
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -2
Query: 346 WCRRNICCSSCRG*PASCPPSSPQRMTEC 260
W R N C SCR PS P+R +C
Sbjct: 189 WLRSNSSCPSCRRPIVLDDPSPPKRCRKC 217
>10_05_0052 - 8586577-8588007
Length = 476
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 356 VFSASATRKKDRLQLKSTCRRWR 424
VF+AS+ D ++ +TCRRWR
Sbjct: 60 VFAASSLDLHDLVRCTATCRRWR 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,444,220
Number of Sequences: 37544
Number of extensions: 302651
Number of successful extensions: 971
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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