Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12a13f
         (668 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)                        32   0.37 
SB_56768| Best HMM Match : VWA (HMM E-Value=0.0042)                    30   1.5  
SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36)        29   3.4  
SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_38465| Best HMM Match : Nitrophorin (HMM E-Value=0.75)              28   7.9  
SB_9975| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-38)                  28   7.9  

>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
          Length = 870

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +1

Query: 409 LSPVETHCSNVDYFIPDENNETKGLSDDAMNRLHMARSTVALFIVAFLTLFIAFWT 576
           L P+ T+CS   YF    N+       +AM RL + R+ +   IV  + +F  F+T
Sbjct: 398 LVPIPTNCSQTQYFREQWNSH--NTMTEAMMRLSLTRTVIFTAIVLQVFVFYYFYT 451


>SB_56768| Best HMM Match : VWA (HMM E-Value=0.0042)
          Length = 815

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 346 RTRGLFRICYPKERPPTVEIYLSPVETHCSN 438
           RT  +  +C   + PP +E+YLSP++    N
Sbjct: 57  RTTTVILMCCRGDEPPNIELYLSPLQNEVRN 87


>SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36)
          Length = 650

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 552 DVVHCFLDGRRRLLEAQSRQHHRHRYT 632
           D++HC LDG    L+  +  HH HR++
Sbjct: 148 DLLHCNLDGHEEFLDFVTNTHH-HRFS 173


>SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2653

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/55 (23%), Positives = 25/55 (45%)
 Frame = +3

Query: 213 SLLNRQLALYRSKAI*HSVIRCGELGGQLAGHPRQLEQQIFLLHQNERSFPHLLP 377
           +L+ + + LY +  + H V+  G  G     +   L+  +  LH+     P+ LP
Sbjct: 262 ALVKKVIQLYETMIVRHGVMLVGPTGSGKTTNYMMLQDTLTSLHEQAEDSPYYLP 316


>SB_38465| Best HMM Match : Nitrophorin (HMM E-Value=0.75)
          Length = 1167

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -1

Query: 650 RHVTSISIAVAVMLPGLRFQQPTTPVQKAMNNVKNATMNNATVD-RAICSLFIASSERP 477
           R+VTS  IA A  +    +++PT   +    ++K+  + +ATV+   +C L +   + P
Sbjct: 352 RNVTSEEIAAAGRIVIHEYRKPTDNTKLIYQDLKDLKVKDATVNLNTLCKLTVPPFQSP 410


>SB_9975| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-38)
          Length = 1101

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 201 FNGHSLLNRQLALYRSKAI*HSVIRCGELGGQL 299
           F+GHSL  R  +L R+  +  +V  CG  GG+L
Sbjct: 370 FSGHSLRTRGWSLNRAANLCLAVTLCGPEGGRL 402


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,736,308
Number of Sequences: 59808
Number of extensions: 345706
Number of successful extensions: 1046
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)