Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12a13f
         (668 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR457153-1|CAG33434.1|  475|Homo sapiens SPG3A protein.                34   0.53 
BC010708-1|AAH10708.2|  558|Homo sapiens spastic paraplegia 3A (...    34   0.53 
AY032844-1|AAK51160.1|  475|Homo sapiens GTPase protein.               34   0.53 
AK223436-1|BAD97156.1|  558|Homo sapiens atlastin variant protein.     34   0.53 
AF444143-1|AAL37898.1|  558|Homo sapiens brain-specific GTP-bind...    34   0.53 
AF131801-1|AAD20047.1|  475|Homo sapiens Unknown protein.              34   0.53 

>CR457153-1|CAG33434.1|  475|Homo sapiens SPG3A protein.
          Length = 475

 Score = 33.9 bits (74), Expect = 0.53
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 487 DDAMNRLHMARSTVALFIVAFLTLFIAFWTGVVG 588
           +D+ N  H AR+   LF+V F+T  IA  TG +G
Sbjct: 353 NDSKNIFHAARTPATLFVVIFITYVIAGVTGFIG 386


>BC010708-1|AAH10708.2|  558|Homo sapiens spastic paraplegia 3A
           (autosomal dominant) protein.
          Length = 558

 Score = 33.9 bits (74), Expect = 0.53
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 487 DDAMNRLHMARSTVALFIVAFLTLFIAFWTGVVG 588
           +D+ N  H AR+   LF+V F+T  IA  TG +G
Sbjct: 436 NDSKNIFHAARTPATLFVVIFITYVIAGVTGFIG 469


>AY032844-1|AAK51160.1|  475|Homo sapiens GTPase protein.
          Length = 475

 Score = 33.9 bits (74), Expect = 0.53
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 487 DDAMNRLHMARSTVALFIVAFLTLFIAFWTGVVG 588
           +D+ N  H AR+   LF+V F+T  IA  TG +G
Sbjct: 353 NDSKNIFHAARTPATLFVVIFITYVIAGVTGFIG 386


>AK223436-1|BAD97156.1|  558|Homo sapiens atlastin variant protein.
          Length = 558

 Score = 33.9 bits (74), Expect = 0.53
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 487 DDAMNRLHMARSTVALFIVAFLTLFIAFWTGVVG 588
           +D+ N  H AR+   LF+V F+T  IA  TG +G
Sbjct: 436 NDSKNIFHAARTPATLFVVIFITYVIAGVTGFIG 469


>AF444143-1|AAL37898.1|  558|Homo sapiens brain-specific GTP-binding
           protein protein.
          Length = 558

 Score = 33.9 bits (74), Expect = 0.53
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 487 DDAMNRLHMARSTVALFIVAFLTLFIAFWTGVVG 588
           +D+ N  H AR+   LF+V F+T  IA  TG +G
Sbjct: 436 NDSKNIFHAARTPATLFVVIFITYVIAGVTGFIG 469


>AF131801-1|AAD20047.1|  475|Homo sapiens Unknown protein.
          Length = 475

 Score = 33.9 bits (74), Expect = 0.53
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 487 DDAMNRLHMARSTVALFIVAFLTLFIAFWTGVVG 588
           +D+ N  H AR+   LF+V F+T  IA  TG +G
Sbjct: 353 NDSKNIFHAARTPATLFVVIFITYVIAGVTGFIG 386


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,458,078
Number of Sequences: 237096
Number of extensions: 1513614
Number of successful extensions: 4062
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4062
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7591280850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)