Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12a13f
         (668 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40414-5|AAA81408.2|  339|Caenorhabditis elegans Hypothetical pr...    72   4e-13
AC024847-1|AAK29961.1|  193|Caenorhabditis elegans Hypothetical ...    31   0.74 
Z48582-5|CAA88467.3|  377|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U88173-10|AAK21389.3|  390|Caenorhabditis elegans Hypothetical p...    28   6.9  

>U40414-5|AAA81408.2|  339|Caenorhabditis elegans Hypothetical
           protein F53B3.5 protein.
          Length = 339

 Score = 71.7 bits (168), Expect = 4e-13
 Identities = 41/147 (27%), Positives = 81/147 (55%), Gaps = 3/147 (2%)
 Frame = +1

Query: 220 STDNWLYIEVKRSNI-QSYAAENSAGNSQVILDSLNNKYFFYTRTRGLFRICYPKERPPT 396
           +TDNW+ ++V R  I  S+  E     S  + ++  +   +++R  GLF +C+P   P  
Sbjct: 43  TTDNWVEVQVNRREIINSFKREPEL--SLRLQNAFGHNNIYFSRNYGLFNLCFPDTVPQD 100

Query: 397 VEIYLSPVETHC--SNVDYFIPDENNETKGLSDDAMNRLHMARSTVALFIVAFLTLFIAF 570
           V  + S + + C  SN ++ +P+   E    S++ + R + A++T+  ++V  + + ++F
Sbjct: 101 VGSF-SKMGSPCIWSN-EFMVPESKKEH--FSNNELYRHYAAKATIIAYVVGIVFVVLSF 156

Query: 571 WTGVVGCWKRSPGNITATAILMLVTCL 651
             G++GCW RS   I +T IL+++  L
Sbjct: 157 IVGLIGCWNRSKKFIMSTGILLILAGL 183


>AC024847-1|AAK29961.1|  193|Caenorhabditis elegans Hypothetical
           protein Y65B4BR.8 protein.
          Length = 193

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 388 VFLSGSRCGKDLSFWCRRNICCSS 317
           VFL G RC +D+  W R++  CSS
Sbjct: 162 VFLEGKRCKEDIDTWLRQDNKCSS 185


>Z48582-5|CAA88467.3|  377|Caenorhabditis elegans Hypothetical
           protein F27E5.5 protein.
          Length = 377

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = -3

Query: 471 FVVLVGNEVVYITAVSLHRRQVDFNCRRSFFRVADAEKTSRSGVEEI 331
           FV +V   V+ ITAV   R+ V FN  R+ FR    + TS + + +I
Sbjct: 192 FVAVVAGAVMNITAVLTFRKVVSFN--RTLFRQRSFKLTSLTEIYQI 236


>U88173-10|AAK21389.3|  390|Caenorhabditis elegans Hypothetical
           protein F46F11.10 protein.
          Length = 390

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +1

Query: 388 PPTVEIYLSPVETHCSNVDYFIPDENNETKGLSDD 492
           P   E  L   E H  NV Y  PD   E + + DD
Sbjct: 237 PIVTENGLETYENHSKNVIYLSPDATEELESVDDD 271


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,717,894
Number of Sequences: 27780
Number of extensions: 256145
Number of successful extensions: 742
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)