Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12a12r
         (751 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   5.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.3  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   5.3  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   7.1  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 155 VLLTLVS*EHNNKTTNVSSNCLFNV 81
           +L+T V+  +NN      + CL N+
Sbjct: 467 ILMTTVNEGNNNMAATYMNECLLNI 491


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -1

Query: 598 KPNIRIMRVLGHVIYALCNPLYLRVSHLNILH 503
           + N+R++ V G  I ++ N  +  +++L ILH
Sbjct: 817 RKNMRVLYVNGSGIESIQNRTFNGLNNLQILH 848


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 163 KSPFVSSCKLHIVLCNYRNSHASSATKQYYKNKQ 264
           K P  + CK      N   +H S   +Q+ KN+Q
Sbjct: 31  KEPICNICKRVYSSLNSLRNHKSIYHRQHSKNEQ 64


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 489 FCKNLL*SHIHPSRSVHVAC 430
           F KNL  + I   R +HV+C
Sbjct: 102 FMKNLELTQIRRDRGLHVSC 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,841
Number of Sequences: 438
Number of extensions: 4761
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)