Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12a11r
(507 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110482-1|CAB54385.1| 316|Caenorhabditis elegans Hypothetical ... 89 1e-18
AL110482-2|CAB60335.1| 316|Caenorhabditis elegans Hypothetical ... 86 2e-17
U55368-5|AAA97992.2| 333|Caenorhabditis elegans Hypothetical pr... 82 2e-16
AL110482-3|CAB60336.1| 339|Caenorhabditis elegans Hypothetical ... 79 2e-15
U80844-1|AAB37976.1| 317|Caenorhabditis elegans Hypothetical pr... 74 5e-14
Z75553-1|CAA99947.2| 320|Caenorhabditis elegans Hypothetical pr... 74 7e-14
U21308-3|AAB93322.2| 321|Caenorhabditis elegans Hypothetical pr... 60 1e-09
Z81088-2|CAB03127.1| 297|Caenorhabditis elegans Hypothetical pr... 57 6e-09
U21324-6|AAA62562.1| 287|Caenorhabditis elegans Hypothetical pr... 54 5e-08
Z71181-2|CAA94895.1| 301|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z81088-3|CAB03128.1| 283|Caenorhabditis elegans Hypothetical pr... 31 0.48
U50068-4|AAB37733.1| 287|Caenorhabditis elegans Hypothetical pr... 30 1.1
AC006627-8|AAK85458.1| 276|Caenorhabditis elegans Hypothetical ... 27 5.9
>AL110482-1|CAB54385.1| 316|Caenorhabditis elegans Hypothetical
protein Y39G8B.1a protein.
Length = 316
Score = 89.4 bits (212), Expect = 1e-18
Identities = 50/157 (31%), Positives = 79/157 (50%), Gaps = 1/157 (0%)
Frame = -2
Query: 506 SIGISNFXQXQIQRIIDSGLEKPXALQIEXNLXXXQPELFKXXRENDIVXMAYXPFGSLX 327
SIG+SNF QIQR+ D+ KP LQ+E + Q +L + +E IV + Y P G+
Sbjct: 156 SIGLSNFTHSQIQRVWDAAEVKPACLQVELHPYFTQVKLREFCKEKGIVVVGYSPLGNPG 215
Query: 326 PSKAQPDAPPPRIDDERLVSIAQKYNKTVPQXALRFLIELGAVVLPKSVHKERXEQNIQL 147
+ + D P + +E + IA+ + KT Q LR+ ++ G +PKSV +R +N+ +
Sbjct: 216 SAFFRKDGDPNVLTNEVVAGIAKAHGKTPAQIILRWFVDSGLSAIPKSVTPQRISENLAV 275
Query: 146 XXFSXTPEEXNLXKSFDTGXRTLP-QTKWSKHPDXPF 39
F T EE + + R + + HP PF
Sbjct: 276 FDFQLTAEEISKIDGINKNWRIVDLSQRDGDHPHCPF 312
>AL110482-2|CAB60335.1| 316|Caenorhabditis elegans Hypothetical
protein Y39G8B.1b protein.
Length = 316
Score = 85.8 bits (203), Expect = 2e-17
Identities = 47/141 (33%), Positives = 73/141 (51%)
Frame = -2
Query: 506 SIGISNFXQXQIQRIIDSGLEKPXALQIEXNLXXXQPELFKXXRENDIVXMAYXPFGSLX 327
SIG+SNF QIQR+ D+ KP LQ+E + Q +L + +E IV + Y P G+
Sbjct: 156 SIGLSNFTHSQIQRVWDAAEVKPACLQVELHPYFTQVKLREFCKEKGIVVVGYSPLGNPG 215
Query: 326 PSKAQPDAPPPRIDDERLVSIAQKYNKTVPQXALRFLIELGAVVLPKSVHKERXEQNIQL 147
+ + D P + +E + IA+ + KT Q LR+ ++ G +PKSV +R +NI +
Sbjct: 216 SAFFRKDGDPNVLTNEVVAGIAKAHGKTPAQIILRWFVDSGLSAIPKSVTPQRIIENISV 275
Query: 146 XXFSXTPEEXNLXKSFDTGXR 84
F + EE + G R
Sbjct: 276 IDFQLSAEEIQAIDGVNRGWR 296
>U55368-5|AAA97992.2| 333|Caenorhabditis elegans Hypothetical
protein T08H10.1 protein.
Length = 333
Score = 82.2 bits (194), Expect = 2e-16
Identities = 51/158 (32%), Positives = 76/158 (48%), Gaps = 3/158 (1%)
Frame = -2
Query: 506 SIGISNFXQXQIQRIIDSGLEKPXALQIEXNLXXXQPELFKXXRENDIVXMAYXPFGSLX 327
++G+SNF Q+Q + D+ KP Q+E ++ Q EL ++ + AY P GS
Sbjct: 159 ALGVSNFSCNQLQALYDAAEVKPANQQVECHIYWPQQELRALCKKLGVTVTAYAPLGSPG 218
Query: 326 PSKAQPDAPPPRIDD--ERLVS-IAQKYNKTVPQXALRFLIELGAVVLPKSVHKERXEQN 156
A+PD P D E +V +A KY+KT Q +R L + G +PKSV +R +N
Sbjct: 219 RKAARPDGVWPEGDPLLEPIVKQLAAKYHKTAAQILIRHLTQHGISTIPKSVSPDRIVEN 278
Query: 155 IQLXXFSXTPEEXNLXKSFDTGXRTLPQTKWSKHPDXP 42
I F + E+ + S +T R KHP P
Sbjct: 279 ISTFDFKLSDEDMHTLNSIETRTRLFIADFAVKHPFFP 316
>AL110482-3|CAB60336.1| 339|Caenorhabditis elegans Hypothetical
protein Y39G8B.2 protein.
Length = 339
Score = 79.0 bits (186), Expect = 2e-15
Identities = 50/157 (31%), Positives = 78/157 (49%), Gaps = 1/157 (0%)
Frame = -2
Query: 506 SIGISNFXQXQIQRIIDSGLEKPXALQIEXNLXXXQPELFKXXRENDIVXMAYXPFGSLX 327
SIG++NF Q++++ GL KP LQ+E N Q E+ + RE I+ A+ G+
Sbjct: 163 SIGLANFNIGQVEQVWTKGLIKPAVLQVEMNPFLDQEEIRQFCREKGIILTAFMLTGNPG 222
Query: 326 PSKAQPDAPPPRIDDERLVSIAQKYNKTVPQXALRFLIELGAVVLPKSVHKERXEQNIQL 147
+ + P + +E L SIA+ + K+V Q +R+ I+L L KS +R QNI +
Sbjct: 223 SALYRKHEDPNLLYNETLQSIAKGHGKSVVQVLVRWAIDLRTTALVKSSESKRIRQNINI 282
Query: 146 XXFSXTPEEXNLXKSFDTGXRTL-PQTKWSKHPDXPF 39
F T +E K+ + R L P HP P+
Sbjct: 283 FKFRLTSQEIARIKALNIDFRILNPLLGNYDHPYFPW 319
>U80844-1|AAB37976.1| 317|Caenorhabditis elegans Hypothetical
protein C07D8.6 protein.
Length = 317
Score = 74.1 bits (174), Expect = 5e-14
Identities = 45/164 (27%), Positives = 82/164 (50%), Gaps = 8/164 (4%)
Frame = -2
Query: 506 SIGISNFXQXQIQRIIDSGLEKPXALQIEXNLXXXQPELFKXXRENDIVXMAYXPFGS-- 333
++G+SN+ QI R + GL Q+E +L Q + ++++I +Y GS
Sbjct: 149 AVGVSNWNNDQISRALALGLTPVHNSQVELHLYFPQHDHVDFCKKHNISVTSYATLGSPG 208
Query: 332 ----LXPSKAQPD-APPPR-IDDERLVSIAQKYNKTVPQXALRFLIELGAVVLPKSVHKE 171
P+ + D AP P + D+ ++++A+K +KT Q LR+ ++ G +LPKS+ +
Sbjct: 209 RVNFTLPTGQKLDWAPAPSDLQDQNVLALAEKTHKTPAQVLLRYALDRGCAILPKSIQEN 268
Query: 170 RXEQNIQLXXFSXTPEEXNLXKSFDTGXRTLPQTKWSKHPDXPF 39
R ++N ++ FS T E+ + R Q + HP+ F
Sbjct: 269 RIKENFEVFDFSLTEEDIAKLEESKNSQRLFLQDFMTGHPEDAF 312
>Z75553-1|CAA99947.2| 320|Caenorhabditis elegans Hypothetical
protein ZC443.1 protein.
Length = 320
Score = 73.7 bits (173), Expect = 7e-14
Identities = 49/168 (29%), Positives = 87/168 (51%), Gaps = 12/168 (7%)
Frame = -2
Query: 506 SIGISNFXQXQIQRIIDSGLEKPXALQIEXNLXXXQPELFKXXRENDIVXMAYXPFGS-- 333
+IG+SNF + QI RI++ A Q+E +L Q + ++++I+ AY GS
Sbjct: 149 AIGVSNFNESQIVRIMNIQKVPIHASQLELHLYLPQKAHRELCKKHNILITAYATLGSPG 208
Query: 332 ---LXPSKAQP-----DAPPPRIDDERLVSIAQKYNKTVPQXALRFLIELGAVVLPKSVH 177
+ S +P ++D+ + ++AQKY+KT Q LR +E+G +V+PK+ +
Sbjct: 209 RMSVVGSNGRPLFESTQNSENEMNDKHVKALAQKYSKTPAQILLRATVEMGIIVIPKTTN 268
Query: 176 KERXEQNIQLXXFSXTPEEXNLXKSFD--TGXRTLPQTKWSKHPDXPF 39
ER ++NI + F+ + E NL ++ + R + HP+ PF
Sbjct: 269 PERMKENINIFDFNISNAEVNLLEAHERTKQERLFWWPNVADHPEDPF 316
>U21308-3|AAB93322.2| 321|Caenorhabditis elegans Hypothetical
protein ZK1290.5 protein.
Length = 321
Score = 59.7 bits (138), Expect = 1e-09
Identities = 40/143 (27%), Positives = 63/143 (44%)
Frame = -2
Query: 506 SIGISNFXQXQIQRIIDSGLEKPXALQIEXNLXXXQPELFKXXRENDIVXMAYXPFGSLX 327
SIG+SN+ + +++ P A Q+E + Q +L E I+ M Y P
Sbjct: 139 SIGVSNYSIEDLDELLEFASILPHANQVELHPWFHQADLKNYCDELGILTMGYCPL---- 194
Query: 326 PSKAQPDAPPPRIDDERLVSIAQKYNKTVPQXALRFLIELGAVVLPKSVHKERXEQNIQL 147
A ++DE L IA KY K+ Q LR+ I+ +PKS R ++N +
Sbjct: 195 -------AKGKYLEDETLCKIASKYQKSPAQICLRWSIQQNVPTVPKSTDCRRLKENTNV 247
Query: 146 XXFSXTPEEXNLXKSFDTGXRTL 78
F + E+ N SF + R +
Sbjct: 248 FDFELSAEDMNTLNSFSSQNRKI 270
>Z81088-2|CAB03127.1| 297|Caenorhabditis elegans Hypothetical
protein F53F1.2 protein.
Length = 297
Score = 57.2 bits (132), Expect = 6e-09
Identities = 40/148 (27%), Positives = 68/148 (45%)
Frame = -2
Query: 506 SIGISNFXQXQIQRIIDSGLEKPXALQIEXNLXXXQPELFKXXRENDIVXMAYXPFGSLX 327
SIG+SN+ ++ + P A Q+E + + L K +E +I A F SL
Sbjct: 156 SIGVSNYEIVHLEELKTYAKVPPCANQLEYHPHFARIPLQKYCKEKNIFFQA---FSSLA 212
Query: 326 PSKAQPDAPPPRIDDERLVSIAQKYNKTVPQXALRFLIELGAVVLPKSVHKERXEQNIQL 147
+ P I+D +V +A+K+N +VP L + + ++PKSV R +N ++
Sbjct: 213 RHE------PKLIEDPVVVELAKKHNTSVPLVLLAWALRQNVGIVPKSVTPSRIVENFKV 266
Query: 146 XXFSXTPEEXNLXKSFDTGXRTLPQTKW 63
+ TPE+ + D G + T W
Sbjct: 267 IDIALTPEDIQSLTALDRGQHYIRCTGW 294
>U21324-6|AAA62562.1| 287|Caenorhabditis elegans Hypothetical
protein C35D10.6 protein.
Length = 287
Score = 54.4 bits (125), Expect = 5e-08
Identities = 37/129 (28%), Positives = 59/129 (45%)
Frame = -2
Query: 506 SIGISNFXQXQIQRIIDSGLEKPXALQIEXNLXXXQPELFKXXRENDIVXMAYXPFGSLX 327
S+G+SNF ++ + P Q+E + Q +L K EN+I AY GS
Sbjct: 145 SVGVSNFEICHLEELKKDSNVVPAVNQVEYHPHFHQDDLVKYCNENNIHFQAYSSLGS-- 202
Query: 326 PSKAQPDAPPPRIDDERLVSIAQKYNKTVPQXALRFLIELGAVVLPKSVHKERXEQNIQL 147
P+ + + P I + +AQKYN +P L F G VLP++ + E N ++
Sbjct: 203 PTYRKQLSEEPLIKE-----LAQKYNVEIPVLLLGFAYCQGISVLPRTTNPEHVATNFKV 257
Query: 146 XXFSXTPEE 120
+ T E+
Sbjct: 258 TKLAITQED 266
>Z71181-2|CAA94895.1| 301|Caenorhabditis elegans Hypothetical
protein K07C5.2 protein.
Length = 301
Score = 39.9 bits (89), Expect = 0.001
Identities = 37/146 (25%), Positives = 59/146 (40%), Gaps = 1/146 (0%)
Frame = -2
Query: 506 SIGISNFXQXQIQRIIDSGLEKPXALQIEXNLXXXQPELFKXXRENDIVXMAYXPFGSLX 327
SIG+SN+ + + + +P Q E +P L K N+IV +Y SL
Sbjct: 158 SIGVSNYEVYHLVEMFEYAKIRPVLNQYEYQPYLTRPTLKKFCDLNNIVVQSY---SSLC 214
Query: 326 PSKAQPDAPPPRIDDERLVSIAQKYNKTVPQXALRFLIELGAVVLPKSVHKERXEQNI-Q 150
+ + ++ LV + QKYN+T F ++PKS R N+
Sbjct: 215 WGDKE------ILQEKPLVDLCQKYNQTPQAILYAFAHCSNTSMIPKSATPSRIHDNLHN 268
Query: 149 LXXFSXTPEEXNLXKSFDTGXRTLPQ 72
T +E +S D G ++ PQ
Sbjct: 269 TIKIKLTEDELKSLRSLDKG-KSFPQ 293
>Z81088-3|CAB03128.1| 283|Caenorhabditis elegans Hypothetical
protein F53F1.3 protein.
Length = 283
Score = 31.1 bits (67), Expect = 0.48
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Frame = -2
Query: 506 SIGISNFXQXQIQRIIDSGLEKPXAL-QIEXNLXXXQPELFKXXRENDIVXMAYXPFGSL 330
S+G+S+F ++ + D G P Q+E + + EL + I A F SL
Sbjct: 143 SVGVSSFEIRHLEELKDLGKNFPPCCNQVEYHPHFTREELKNYCKSEGIFFQA---FSSL 199
Query: 329 XPSKAQPDAPPPRIDDERLVSIAQKYNKTVPQXALRFLIELGAVVLPKSVHKERXEQNIQ 150
+ E + +A+KY+ L + ++PKS + ER QN++
Sbjct: 200 ARHNET------LLSSEIITRLAEKYHVPKTTVLLSWATSQKVGIIPKSTNPERLAQNLK 253
>U50068-4|AAB37733.1| 287|Caenorhabditis elegans Hypothetical
protein C01G5.5 protein.
Length = 287
Score = 29.9 bits (64), Expect = 1.1
Identities = 28/117 (23%), Positives = 48/117 (41%)
Frame = -2
Query: 506 SIGISNFXQXQIQRIIDSGLEKPXALQIEXNLXXXQPELFKXXRENDIVXMAYXPFGSLX 327
SIG+SN+ I+ + +P QIE + + L +N+I+ A+ P G
Sbjct: 146 SIGVSNYEPHHIEEMRSYITIEPQVNQIEYHPHFQRKVLRAYCNKNEILFQAFSPLGR-- 203
Query: 326 PSKAQPDAPPPRIDDERLVSIAQKYNKTVPQXALRFLIELGAVVLPKSVHKERXEQN 156
+ D + IA + TV L ++++ V+ KSV R +N
Sbjct: 204 -------GNKTLLGDSTMERIALCHKTTVANVILAWIMKGKYGVVAKSVTPSRVAEN 253
>AC006627-8|AAK85458.1| 276|Caenorhabditis elegans Hypothetical
protein E01A2.1 protein.
Length = 276
Score = 27.5 bits (58), Expect = 5.9
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -2
Query: 506 SIGISNFXQXQIQRIIDSGLEKPXALQIEXN-LXXXQPELFKXXRENDIVXMAY 348
SIG+S+F Q++ IID KP + + PEL +ND+ + +
Sbjct: 160 SIGVSDFSARQLKTIIDHFDVKPSINHVRLDGCCQVPPELQALANDNDVQLLVH 213
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,131,799
Number of Sequences: 27780
Number of extensions: 139370
Number of successful extensions: 323
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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