Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12a11f
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    30   0.016
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    30   0.016
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    27   0.20 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    25   0.61 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   4.3  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   4.3  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   9.9  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 30.3 bits (65), Expect = 0.016
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 187 RASCHIRVGSWIHTHRHRVQIWNRGPSGKGPDQEI 291
           R  CHI + S+ +T R     WN GP+  G   E+
Sbjct: 149 RQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEV 183


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 30.3 bits (65), Expect = 0.016
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 187 RASCHIRVGSWIHTHRHRVQIWNRGPSGKGPDQEI 291
           R  CHI + S+ +T R     WN GP+  G   E+
Sbjct: 88  RQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEV 122


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 264 WSSIPYLYAVSMCVYPASNAYMTACSVSLVT*TTFPLGR 148
           WS  PY++  + C+   S A  T+ + +++T T F + R
Sbjct: 115 WSHFPYVFGEAFCII-QSFAAETSANATVLTITAFTVER 152


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 187 RASCHIRVGSWIHTHRHRVQIWNRGPSGKGPDQEI 291
           R  CHI + S+ +T R     WN G    G   E+
Sbjct: 149 RQLCHIEIESFGYTMRDIRYKWNAGLQSVGISNEV 183


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 182 DTEQAVIYALEAGYTHIDTAYKYGIEDQVGRALTKKFSE 298
           DT++  +     GYT  D  YK+    QV  A   K S+
Sbjct: 140 DTQRCPLQFGSFGYTKRDVIYKWNSARQVAIAEDMKLSQ 178


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 196 CHIRVGSWIHT 228
           C I  GSW+H+
Sbjct: 183 CRINFGSWVHS 193


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 515 KKLGLTKSIGISNFNQEQIQRIIDSGLEKP 604
           K  GLTK++ I N+N +  + I+ S    P
Sbjct: 94  KLYGLTKNLEIKNYNIDWDKCILSSESYNP 123


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/41 (21%), Positives = 20/41 (48%)
 Frame = -2

Query: 384 FLSAGITCSLSW*EFQSLVVIKIDSLFSPSENFLVRALPTW 262
           +++A +   +   +  + V  K  + F PS ++ V  +P W
Sbjct: 147 YVAAKLALGVRLPDIHNSVTGKTTACFEPSLDYCVVKIPRW 187


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,774
Number of Sequences: 438
Number of extensions: 4229
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)