Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12a10r
         (751 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50308-5|AAG24033.2|  284|Caenorhabditis elegans Seven tm recept...    30   1.5  
Z92967-2|CAB07478.1| 1101|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z82052-10|CAB04830.1| 1101|Caenorhabditis elegans Hypothetical p...    29   3.5  
U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical pr...    29   3.5  
DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determini...    29   3.5  
AL021572-4|CAA16519.1| 1101|Caenorhabditis elegans Hypothetical ...    29   3.5  
AL021507-1|CAA16430.1| 1101|Caenorhabditis elegans Hypothetical ...    29   3.5  
AF039042-11|AAC48251.1|  343|Caenorhabditis elegans Serpentine r...    29   3.5  
AF025469-4|AAG00032.1|  270|Caenorhabditis elegans Hypothetical ...    29   3.5  
U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical p...    28   6.2  
AF068713-18|AAC17791.2|   96|Caenorhabditis elegans Hypothetical...    28   8.1  

>U50308-5|AAG24033.2|  284|Caenorhabditis elegans Seven tm receptor
           protein 94 protein.
          Length = 284

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/43 (25%), Positives = 27/43 (62%)
 Frame = +2

Query: 332 VISNV*TEMISLFP*ISTLLIQFFVVVYNGYKIMLINHEKKIN 460
           +I+N+ +  ++L+P +  L++ +F+  Y  Y +  +N  KK++
Sbjct: 226 MIANMTSVCLALYPALDPLVVMYFIKDYRSYLLKKMNISKKVS 268


>Z92967-2|CAB07478.1| 1101|Caenorhabditis elegans Hypothetical
           protein T25E12.4a protein.
          Length = 1101

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 418 WLQNYVDQS*KKNKLKNKHFW*KKNEGLHTLQEEITDSIYSYI 546
           W+ +Y DQ      ++ KH+W    +G+   Q+E T   Y  I
Sbjct: 630 WIVHYTDQQ----NMRKKHYWRLDTKGITMYQDENTTRYYKEI 668


>Z82052-10|CAB04830.1| 1101|Caenorhabditis elegans Hypothetical
           protein T25E12.4a protein.
          Length = 1101

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 418 WLQNYVDQS*KKNKLKNKHFW*KKNEGLHTLQEEITDSIYSYI 546
           W+ +Y DQ      ++ KH+W    +G+   Q+E T   Y  I
Sbjct: 630 WIVHYTDQQ----NMRKKHYWRLDTKGITMYQDENTTRYYKEI 668


>U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical
           protein F52C9.7 protein.
          Length = 451

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = -2

Query: 735 LCRQIQRSVSRNAGDLRRKHHSPHRRVWREGRLPEDRILWSDR----NRIRAHVPREEEL 568
           + R+  RS SR+A  LRRK  SP R      ++   R   +D+     +  +H+PR  + 
Sbjct: 217 VARKPSRSRSRSAERLRRKSRSPRRSREEPRKMSRSRSRSADKASSSRQFDSHIPRHLQQ 276

Query: 567 TRT 559
            R+
Sbjct: 277 QRS 279


>DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determining
           protein MOG-3 protein.
          Length = 451

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = -2

Query: 735 LCRQIQRSVSRNAGDLRRKHHSPHRRVWREGRLPEDRILWSDR----NRIRAHVPREEEL 568
           + R+  RS SR+A  LRRK  SP R      ++   R   +D+     +  +H+PR  + 
Sbjct: 217 VARKPSRSRSRSAERLRRKSRSPRRSREEPRKMSRSRSRSADKASSSRQFDSHIPRHLQQ 276

Query: 567 TRT 559
            R+
Sbjct: 277 QRS 279


>AL021572-4|CAA16519.1| 1101|Caenorhabditis elegans Hypothetical
           protein T25E12.4a protein.
          Length = 1101

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 418 WLQNYVDQS*KKNKLKNKHFW*KKNEGLHTLQEEITDSIYSYI 546
           W+ +Y DQ      ++ KH+W    +G+   Q+E T   Y  I
Sbjct: 630 WIVHYTDQQ----NMRKKHYWRLDTKGITMYQDENTTRYYKEI 668


>AL021507-1|CAA16430.1| 1101|Caenorhabditis elegans Hypothetical
           protein T25E12.4a protein.
          Length = 1101

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 418 WLQNYVDQS*KKNKLKNKHFW*KKNEGLHTLQEEITDSIYSYI 546
           W+ +Y DQ      ++ KH+W    +G+   Q+E T   Y  I
Sbjct: 630 WIVHYTDQQ----NMRKKHYWRLDTKGITMYQDENTTRYYKEI 668


>AF039042-11|AAC48251.1|  343|Caenorhabditis elegans Serpentine
           receptor, class h protein199 protein.
          Length = 343

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/42 (33%), Positives = 27/42 (64%)
 Frame = -1

Query: 478 KSVYF*VYFFFMIDQHNFVTIINNNKKLYQKCTYSWK*TYHF 353
           +S+YF + +FFM+  +  V+I  N  + Y+ C+++ K T+ F
Sbjct: 100 QSIYFIIIYFFML--NGIVSIFEN--RFYKICSFTSKNTWKF 137


>AF025469-4|AAG00032.1|  270|Caenorhabditis elegans Hypothetical
           protein W09B6.5 protein.
          Length = 270

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = -1

Query: 541 NYR*NR*SLLVMYVILRFFFTKSVYF*VYFFFMIDQHNFVTIINNNKKLYQ 389
           N+R NR    +     +FF  K+ YF ++ FF+ +Q+  +T+I      +Q
Sbjct: 213 NFRENRKKNCLKIFQKKFFLAKNFYFQIFNFFIANQY-LITLIYTFSHFFQ 262


>U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical
           protein C56C10.12 protein.
          Length = 1599

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = -3

Query: 749 RSRVDFAAKYNAQCHAMLEIYGESIIHLIEEFGAKGVCQRIGFCGRTETAYV 594
           RSR ++A + N +  ++ EIY   I  +     ++G+ +RIG  G  ++ ++
Sbjct: 664 RSRCEYALRSNKKM-SIHEIYDTPICEVRARISSQGISKRIGALGAQDSEFL 714


>AF068713-18|AAC17791.2|   96|Caenorhabditis elegans Hypothetical
           protein T24A6.1 protein.
          Length = 96

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -1

Query: 460 VYFFFMIDQHNF--VTIINNNKKLYQKCTYSW 371
           ++ FFM ++HNF    +  NNKK Y +  Y W
Sbjct: 66  IFSFFMFNKHNFSLFVLTFNNKKQYSR--YIW 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,563,074
Number of Sequences: 27780
Number of extensions: 306967
Number of successful extensions: 727
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)