Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12a10f
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    27   2.1  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    27   2.7  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   4.8  
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual        25   6.3  
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S...    25   6.3  
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp...    25   8.3  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    25   8.3  

>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +1

Query: 439 IESACQDIQYPAIAKICKDNTAQFENYIHHVLKSNTSAETM 561
           I++AC   Q+  + +IC+DN       + ++LK    A+ +
Sbjct: 729 IQAACLMNQFTEVERICRDNNVYNPEKVKNLLKEAKLADQL 769


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 511 RIGPCCLCISSRSQDTGYPGTPIRCSQP 428
           R+ PC  C+ S SQ   YP  PIR   P
Sbjct: 31  RLHPCFQCVKSNSQ-CFYPEDPIRRRAP 57


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -3

Query: 340  PAFVSPTQSPYSVQPRRIQPP 278
            P    P QSP  VQP   QPP
Sbjct: 1031 PMAADPFQSPLYVQPTGFQPP 1051


>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 108 WLSKY*NLNNSVLILLRID*YQNVKSPLSVTKFT 7
           W  +  ++N S   ++++D Y N+KS LS  K T
Sbjct: 386 WNWELGSVNESEYTVVKVDFYNNIKSYLSEVKNT 419


>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
           Spo6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +1

Query: 463 QYPAIAKICKDNTAQFENYIHHVLKSNTSAETMCKSSACVT 585
           Q P+I  I ++     +N + +  K+ TS + +C+++AC T
Sbjct: 19  QNPSIQNINEEVKRDIQNPLSY--KTETSDKELCQTAACAT 57


>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
           Alp13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +3

Query: 309 YGDCVGETKAGCF*QRNIIEIRETIPRTQRC*RPY**GISGCEHRIGV-PGYPVSCDRED 485
           +  C+G      F ++  +EIR+  P T+ C       + G EH I +    P   DR +
Sbjct: 239 FNKCLGNMLLYRFERQQYLEIRQQYPDTEMC------DLYGVEHLIRLFVSLPELIDRTN 292

Query: 486 MQRQ 497
           M  Q
Sbjct: 293 MDSQ 296


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
            complex subunit Tpr1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1039

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 316  TVWEKQKPDVSDNEISSKFVKLF 384
            T+ EKQ  D++DN+  +K + LF
Sbjct: 1011 TIEEKQDNDITDNQDDNKELNLF 1033


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,477,002
Number of Sequences: 5004
Number of extensions: 49646
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)