Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12a10f
(594 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1502 + 30616070-30616182,30617524-30617752,30618777-306188... 37 0.011
11_02_0063 + 7916048-7917135,7917225-7918690,7920177-7920238,792... 34 0.074
11_02_0062 - 7909343-7909413,7909509-7910974,7911064-7912088,791... 34 0.074
02_03_0201 + 16302797-16302799,16303949-16304084,16304163-163042... 34 0.074
11_06_0339 - 22488214-22488254,22488339-22488829,22490233-224904... 30 1.2
09_02_0396 - 8540532-8540549,8540656-8542129,8542217-8543121 30 1.2
08_02_0854 - 21905054-21906308,21906396-21907300 30 1.2
07_03_0163 + 14588041-14588266,14588835-14589001,14589880-145900... 30 1.2
03_06_0566 + 34760991-34761186,34761283-34761455,34762370-347624... 30 1.2
01_02_0057 - 10691403-10691420,10691525-10692998,10693086-10693990 30 1.2
06_03_0522 - 21726317-21726634,21727202-21727654,21727771-217280... 29 2.1
04_03_0927 + 20871487-20871903,20872667-20872812,20873204-208733... 29 2.8
05_07_0198 - 28359092-28359457,28359574-28359729,28359844-283600... 29 3.7
12_01_0572 + 4684050-4684243,4684332-4684426,4684686-4685404 28 4.9
04_03_0434 + 15889712-15889797,15890086-15890287,15891184-158913... 28 4.9
11_06_0115 + 20288220-20288303,20289223-20289706,20290160-202903... 28 6.5
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 28 6.5
11_06_0395 + 23088737-23088823,23090198-23090346,23090570-230907... 27 8.5
>06_03_1502 +
30616070-30616182,30617524-30617752,30618777-30618881,
30618961-30619063,30619150-30619342,30619627-30619678
Length = 264
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = -2
Query: 497 LSLHIFAIAGYWISWHADSMLAARYSSLIRSLTSLSPRNSFTNFDDISLSE 345
+S IF + I ++ A R + L+R +T L PRNSFTN+D+ L E
Sbjct: 37 MSNEIFNVVLDEIIVDLNNRFAERSTRLLRCITCLDPRNSFTNYDEDKLIE 87
>11_02_0063 +
7916048-7917135,7917225-7918690,7920177-7920238,
7921808-7922407
Length = 1071
Score = 34.3 bits (75), Expect = 0.074
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -2
Query: 446 DSMLAARYSSLIRSLTSLSPRNSFTNFDDISLSE 345
++ A R + L+R + L PRNSF NFD+ L E
Sbjct: 680 NNRFAERSTQLLRCIACLDPRNSFANFDEDKLIE 713
>11_02_0062 -
7909343-7909413,7909509-7910974,7911064-7912088,
7912300-7912809,7913418-7913441,7913617-7913673
Length = 1050
Score = 34.3 bits (75), Expect = 0.074
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -2
Query: 446 DSMLAARYSSLIRSLTSLSPRNSFTNFDDISLSE 345
++ A R + L+R + L PRNSF NFD+ L E
Sbjct: 856 NNRFAERSTQLLRCIACLDPRNSFANFDEDKLIE 889
>02_03_0201 +
16302797-16302799,16303949-16304084,16304163-16304250,
16305531-16305683,16306647-16306809,16306906-16307090,
16307164-16307337,16308055-16308200,16308369-16308492,
16308608-16308788,16309302-16309371,16310155-16310196,
16310276-16310394,16310474-16310672,16311442-16311573,
16312435-16312538,16312641-16312820,16314000-16314090,
16314100-16314139,16314225-16314364,16314500-16314660,
16314897-16315020,16315104-16315255
Length = 968
Score = 34.3 bits (75), Expect = 0.074
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 90 FSIWRAKIKAGVLNLNYIRNDDKHVCCLSTVSNVPL 197
F+IW ++K + N+ R DK VCCL S + L
Sbjct: 759 FNIWFEQVKKSGVRANFKREHDKKVCCLGLTSLISL 794
>11_06_0339 -
22488214-22488254,22488339-22488829,22490233-22490405,
22492232-22492287,22492814-22492997,22494045-22494078,
22494326-22494390,22494710-22494843,22495066-22495201
Length = 437
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 422 SSLIRSLTSLSPRNSFTNFDDISLSE 345
+ L+R + L PRNSF N+D+ L E
Sbjct: 263 TQLLRCIACLDPRNSFANYDEDKLIE 288
>09_02_0396 - 8540532-8540549,8540656-8542129,8542217-8543121
Length = 798
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = -2
Query: 422 SSLIRSLTSLSPRNSFTNFD 363
S L+ ++SL+PRNSF+NFD
Sbjct: 628 SELLVCMSSLNPRNSFSNFD 647
>08_02_0854 - 21905054-21906308,21906396-21907300
Length = 719
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = -2
Query: 422 SSLIRSLTSLSPRNSFTNFD 363
S L+ ++SL+PRNSF+NFD
Sbjct: 629 SELLVCMSSLNPRNSFSNFD 648
>07_03_0163 +
14588041-14588266,14588835-14589001,14589880-14590068,
14590193-14590315,14590531-14590793,14590882-14590976,
14591529-14591965,14592461-14592481
Length = 506
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = -2
Query: 422 SSLIRSLTSLSPRNSFTNFD 363
S L+ ++SL+PRNSF+NFD
Sbjct: 465 SELLVCMSSLNPRNSFSNFD 484
>03_06_0566 +
34760991-34761186,34761283-34761455,34762370-34762416,
34762546-34762640,34762734-34762816,34763331-34763399,
34763874-34764059,34764374-34764508,34764774-34764908,
34765148-34765218,34765393-34765470,34765626-34765767,
34765940-34766050
Length = 506
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 391 LKDVKDLINEEYLAASIESACQDIQYPAIAKICKDNTA 504
L+ + DL+NE + + S+ C + + K+C+DN A
Sbjct: 402 LQKLGDLMNESHYSCSVLYECSCPELEELVKVCRDNGA 439
>01_02_0057 - 10691403-10691420,10691525-10692998,10693086-10693990
Length = 798
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = -2
Query: 422 SSLIRSLTSLSPRNSFTNFD 363
S L+ ++SL+PRNSF+NFD
Sbjct: 628 SELLVCMSSLNPRNSFSNFD 647
>06_03_0522 -
21726317-21726634,21727202-21727654,21727771-21728025,
21728109-21728249,21728404-21728565,21728660-21728820,
21731598-21731733
Length = 541
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +1
Query: 316 TVWEKQKPDVSDNEISSKFVKLFRGLKDVKDLINEEYL-AASIESACQDIQYPAIAKICK 492
T W + + ++ + V LF+ + + +IN+ +L A +CQ+ Y I ++C
Sbjct: 324 TEWAMYELAKNPDKQARNIVTLFQLIVGILGIINQSFLFLAFFLLSCQERLYQEIREVCG 383
Query: 493 DNTAQFEN 516
D T E+
Sbjct: 384 DETVTEEH 391
>04_03_0927 + 20871487-20871903,20872667-20872812,20873204-20873301,
20873378-20873572,20873670-20873797,20873892-20874050,
20875119-20875223,20875449-20875559,20875653-20875790,
20875909-20876091,20876362-20876517,20876615-20876738,
20876820-20877030,20877614-20877729,20877828-20878053,
20878218-20878311,20879198-20879275,20879822-20879971,
20880086-20880292,20880584-20880788,20880990-20881096
Length = 1117
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/61 (26%), Positives = 25/61 (40%)
Frame = +1
Query: 406 DLINEEYLAASIESACQDIQYPAIAKICKDNTAQFENYIHHVLKSNTSAETMCKSSACVT 585
+ I YL+ E A + +Q + K C+ T EN HH + S + V+
Sbjct: 950 ETILRTYLSTEAEQALRSLQENLLEKACESVTEALENPGHHRRPTRGSEDAASDDRQSVS 1009
Query: 586 P 588
P
Sbjct: 1010 P 1010
>05_07_0198 -
28359092-28359457,28359574-28359729,28359844-28360011,
28360082-28360206,28360288-28360405,28360491-28360718,
28360959-28361099,28361433-28361498,28361770-28361862,
28361965-28362225
Length = 573
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 359 ISLSETSGFCFSHTVAVQCPTAPHSAPRFRLSHHTCGPLA 240
++LS + A + PTAP +A F +SH C PLA
Sbjct: 7 LALSHPKTLAAAAAAAPKAPTAP-AAVSFPVSHAACAPLA 45
>12_01_0572 + 4684050-4684243,4684332-4684426,4684686-4685404
Length = 335
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -2
Query: 422 SSLIRSLTSLSPRNSFTNFD 363
S L+ ++SL+P NSF+NFD
Sbjct: 301 SELLVCMSSLNPHNSFSNFD 320
>04_03_0434 +
15889712-15889797,15890086-15890287,15891184-15891323,
15891420-15891559,15891762-15891913,15892773-15892902,
15892990-15893141
Length = 333
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +3
Query: 90 FSIWRA---KIKAGVLNLNYIRNDDKHVCCLSTVSNVPL 197
F++W ++K + N+ R DK VCCL S + L
Sbjct: 122 FNLWFGMLQQVKKSGIRANFKREHDKKVCCLGLTSLISL 160
>11_06_0115 + 20288220-20288303,20289223-20289706,20290160-20290393,
20291811-20292770,20292931-20293404,20293406-20294664
Length = 1164
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +1
Query: 223 QVPKECAKGPQVWCESLKRGAECGAVGHCTATVWEKQKPDVSDNEISSKFVKLFRGLKDV 402
Q+P+E A + +L R G + ++W + D+S N++S + L +
Sbjct: 976 QIPEEIASLALLKNLNLSRNYLSGKIPQKIGSLWSLESLDLSRNKLSGEIPPSLSNLSYL 1035
Query: 403 KDL-INEEYLAASIESACQ 456
DL ++ L+ I S Q
Sbjct: 1036 SDLDLSHNNLSGRIPSGSQ 1054
>06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 27.9 bits (59), Expect = 6.5
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Frame = +1
Query: 337 PDVSDN--EISSKFVKLFRGLKD-------VKDLINEEYLAASIESACQDIQYPAIAKIC 489
PD++ N EI K + ++R L D K + E L IESA Q PAI K
Sbjct: 1541 PDLNRNITEIFGKLINIYRALGDDRRSFSYYKAIPVIEKLPFKIESADQVKDLPAIGKSL 1600
Query: 490 KDNTAQFEN 516
KD+ + N
Sbjct: 1601 KDHINEIVN 1609
>11_06_0395 + 23088737-23088823,23090198-23090346,23090570-23090708,
23090795-23090889,23090967-23091080,23091674-23091803,
23091931-23092052,23092889-23093007,23093946-23094034,
23094072-23094245,23094310-23094616,23094726-23095180,
23095334-23096315,23096381-23097396,23097757-23097792,
23098065-23098130
Length = 1359
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 495 QHGPIRKLHTSRSQIEHIGRDNV 563
Q P+R+LH ++ I +GRDN+
Sbjct: 1283 QREPLRRLHYTKCLIISVGRDNI 1305
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,925,174
Number of Sequences: 37544
Number of extensions: 323439
Number of successful extensions: 1044
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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