Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12a09f
         (608 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    25   0.50 
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    25   0.50 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    25   0.50 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    25   0.50 
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    25   0.50 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           25   0.50 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    25   0.50 
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    25   0.66 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   8.1  
DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      21   8.1  

>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.0 bits (52), Expect = 0.50
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +1

Query: 76  STRKISKPSTS-ASKESCSPAK*CTSSCGSIDPGYDSSSTSAALAIRADGCHGWWRSCRI 252
           ST    KP+TS AS+   SPA   +S+  +   G +++++ +  +      + W +   +
Sbjct: 150 STSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRVHL 209

Query: 253 G 255
           G
Sbjct: 210 G 210


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 25.0 bits (52), Expect = 0.50
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +1

Query: 76  STRKISKPSTS-ASKESCSPAK*CTSSCGSIDPGYDSSSTSAALAIRADGCHGWWRSCRI 252
           ST    KP+TS AS+   SPA   +S+  +   G +++++ +  +      + W +   +
Sbjct: 150 STSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRVHL 209

Query: 253 G 255
           G
Sbjct: 210 G 210


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.0 bits (52), Expect = 0.50
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +1

Query: 76  STRKISKPSTS-ASKESCSPAK*CTSSCGSIDPGYDSSSTSAALAIRADGCHGWWRSCRI 252
           ST    KP+TS AS+   SPA   +S+  +   G +++++ +  +      + W +   +
Sbjct: 150 STSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRVHL 209

Query: 253 G 255
           G
Sbjct: 210 G 210


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 25.0 bits (52), Expect = 0.50
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +1

Query: 76  STRKISKPSTS-ASKESCSPAK*CTSSCGSIDPGYDSSSTSAALAIRADGCHGWWRSCRI 252
           ST    KP+TS AS+   SPA   +S+  +   G +++++ +  +      + W +   +
Sbjct: 150 STSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRVHL 209

Query: 253 G 255
           G
Sbjct: 210 G 210


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 25.0 bits (52), Expect = 0.50
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +1

Query: 76  STRKISKPSTS-ASKESCSPAK*CTSSCGSIDPGYDSSSTSAALAIRADGCHGWWRSCRI 252
           ST    KP+TS AS+   SPA   +S+  +   G +++++ +  +      + W +   +
Sbjct: 106 STSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRVHL 165

Query: 253 G 255
           G
Sbjct: 166 G 166


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 25.0 bits (52), Expect = 0.50
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +1

Query: 76  STRKISKPSTS-ASKESCSPAK*CTSSCGSIDPGYDSSSTSAALAIRADGCHGWWRSCRI 252
           ST    KP+TS AS+   SPA   +S+  +   G +++++ +  +      + W +   +
Sbjct: 150 STSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRVHL 209

Query: 253 G 255
           G
Sbjct: 210 G 210


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 25.0 bits (52), Expect = 0.50
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +1

Query: 76  STRKISKPSTS-ASKESCSPAK*CTSSCGSIDPGYDSSSTSAALAIRADGCHGWWRSCRI 252
           ST    KP+TS AS+   SPA   +S+  +   G +++++ +  +      + W +   +
Sbjct: 150 STSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRVHL 209

Query: 253 G 255
           G
Sbjct: 210 G 210


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 0.66
 Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +1

Query: 76  STRKISKPSTSASKESCSPAK*CTSSCGSID-PGYDSSSTSAALAIRADGCHGWWRSCRI 252
           ST    KP+TS + ++ S     TSS  S +  G +++++ ++ +      + W +   +
Sbjct: 150 STSPPGKPATSTTSQNLSSPASSTSSTSSTEKAGTNNNNSKSSQSSNPPQIYPWMKRVHL 209

Query: 253 G 255
           G
Sbjct: 210 G 210


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 245 QLRHQPWQPSARIARAAE 192
           Q  H+PW    ++ RAA+
Sbjct: 455 QYIHEPWTAPEQVQRAAK 472


>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 95  LLIFLVEA*FNQHLNRKLYFCIINTTDEIEL 3
           L IFL     +  LN K+     +TTDE ++
Sbjct: 13  LTIFLSSMCLDPRLNSKIQVSGASTTDECQV 43


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,095
Number of Sequences: 336
Number of extensions: 2326
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15457268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)