Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12a09f
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   2.1  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    26   3.7  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    25   6.5  
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    25   8.7  

>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 73  ASTRKISKPSTSASKESCSPAK*CTSSCGSIDPGYDSSSTSAA 201
           +ST   + PS+S+S  S S +   +SS  S      SSS+S++
Sbjct: 147 SSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 189



 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 76  STRKISKPSTSASKESCSPAK*CTSSCGSIDPGYDSSSTSAA 201
           S+   S PS+S++  + SP+   +SS  S      SSS+S++
Sbjct: 137 SSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSS 178


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 79  TRKISKPSTSASKESCSPAK*CTSSCGSIDPGYDSSSTS 195
           T   S PS+S+S  S SP+   + S  S      SSS+S
Sbjct: 148 TSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSS 186



 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 73  ASTRKISKPSTSASKESCSPAK*CTSSCGSIDPGYDSSSTSAA 201
           +S+   S PS+S+SK S S     +SS  S      SSS+ ++
Sbjct: 157 SSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSS 199


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 103 TSASKESCSPAK*CTSSCGSIDPGYDSSSTSAALAIRADG 222
           T+    S SP+   TS  GS++      S+SA  AI+++G
Sbjct: 370 TNGGGPSDSPSSSSTSVRGSVNDSNSPISSSATFAIQSNG 409


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +3

Query: 57  VLIKSCLDEEDQQALHQRLKG---ELLPRQVMYQLVRLHRPRLRQ*LNLSSPRYSGRWL 224
           V + + +DE ++ + + RL+    E L   V+ Q  R HR  L +  +L  P Y   WL
Sbjct: 511 VSLNTLVDEWNKNSDNPRLEKFSFEKLLASVLNQFDRYHRLLLEEGFSLILPEYYQYWL 569


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,040,065
Number of Sequences: 5004
Number of extensions: 36322
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)