Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12a09f
         (608 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23667| Best HMM Match : No HMM Matches (HMM E-Value=.)              68   5e-12
SB_3454| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.18 
SB_34697| Best HMM Match : Ion_trans (HMM E-Value=7.9e-38)             31   0.97 
SB_47082| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_2438| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.7  
SB_46897| Best HMM Match : zf-CCHC (HMM E-Value=0.12)                  28   5.1  
SB_28743| Best HMM Match : PCI (HMM E-Value=0.00094)                   28   5.1  
SB_16776| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_5252| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.1  
SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54)                  28   6.8  
SB_24473| Best HMM Match : An_peroxidase (HMM E-Value=0)               28   6.8  
SB_31799| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.0  
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_23667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 609

 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 37/101 (36%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
 Frame = +2

Query: 206 LFGQMXXXXXXXXXXXXXXXXXXXXLTGMFSGGGSSEXXXXXXXXXXXXTYNQYQGQPAQ 385
           LFGQM                    L G   G GS +                YQ Q +Q
Sbjct: 50  LFGQMASTAAGVAIGSTVGHVIGGALVGG-GGHGSEDAAQQQQASPYQQQAAPYQPQMSQ 108

Query: 386 G----PCAWEIKQFLECAQQQHDLSLCDGFNEALRQCKVNN 496
           G    PC +E++QF+ECAQ   D+++C GFNEALRQCK+ N
Sbjct: 109 GQQQNPCQYELQQFVECAQNNSDMNMCQGFNEALRQCKLYN 149


>SB_3454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +1

Query: 148 SSCGSIDPGYDSSSTSAALAIRADGCHGWWR--SCRIGCGSC 267
           S C  I+P  +  + S +L      C   W+  SC +GCGSC
Sbjct: 46  SKCLPINPCQNGGTCSESLGTYRCNCMSGWQGLSCEVGCGSC 87


>SB_34697| Best HMM Match : Ion_trans (HMM E-Value=7.9e-38)
          Length = 1851

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = +3

Query: 306  EAASQPSNSKQLLQLKPTINTRDSRLKDHARGRSSNSWNVLNNSTTCHSVMASMKLYVNA 485
            E A+Q   +K  L+  P+IN R   L  H+  R S   N+     T H   A   LY   
Sbjct: 1258 EIAAQEEIAKPDLESLPSINDRRQSLGGHSHRRRSTVLNLDTRRGTLHQREAQCLLYFQR 1317

Query: 486  K 488
            K
Sbjct: 1318 K 1318


>SB_47082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 908

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +3

Query: 354 PTINTRDSRLKDHARGRSSNSWNVLNNSTTCHSVMASMKL 473
           P I+T D  LKD A+GR +NS N L    + +   A+M L
Sbjct: 748 PYIHTPDDSLKDTAKGRENNSINSLPLDISQNREKAAMGL 787


>SB_2438| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1086

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 275  YQPHDPQPILQLRHQPWQPS 216
            Y P  P    +LRHQPW+PS
Sbjct: 1016 YLPEKPAACDRLRHQPWKPS 1035


>SB_46897| Best HMM Match : zf-CCHC (HMM E-Value=0.12)
          Length = 303

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +2

Query: 368 QGQPAQGP--CAWEIKQFLECAQQQHDLSLCDGFNEALRQCKVNNH 499
           + QP  GP   A    + + C +Q+HD  LC   N+   +C    H
Sbjct: 213 KSQPKGGPQGSAQGKSKCMFCGKQKHDHQLCPAKNDTCHKCNKRVH 258


>SB_28743| Best HMM Match : PCI (HMM E-Value=0.00094)
          Length = 322

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/43 (23%), Positives = 25/43 (58%)
 Frame = +3

Query: 354 PTINTRDSRLKDHARGRSSNSWNVLNNSTTCHSVMASMKLYVN 482
           P +    + L DH + ++++   +L+ +   H+++++ KLY N
Sbjct: 175 PELQEFSTMLMDHQKAKTADGSTILDRAVIEHNLLSASKLYNN 217


>SB_16776| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1306

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +2

Query: 368 QGQPAQGP--CAWEIKQFLECAQQQHDLSLCDGFNEALRQCKVNNH 499
           + QP  GP   A    + + C +Q+HD  LC   N+   +C    H
Sbjct: 195 KSQPKGGPQGSAQGKSKCMFCGKQKHDHQLCPAKNDTCHKCNKRVH 240


>SB_5252| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 541

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +1

Query: 67  NHASTRKISKPSTSASKESCSPAK*CTSSCGSIDPGYDSSSTSAALAIRADGC 225
           NHA  +++ +    +SK++C PAK       +  P Y  SST     I  +GC
Sbjct: 233 NHA-LKELWRYLCRSSKKTCDPAKPAKIPFRNTTPSYLLSSTRQQAGIVNEGC 284


>SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54)
          Length = 776

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 79  TRKISKPSTSASKESCSPAK*CTSSC 156
           TR+  +P   +S E  +PA  CTSSC
Sbjct: 715 TRRRHRPIEGSSSEPDTPASSCTSSC 740


>SB_24473| Best HMM Match : An_peroxidase (HMM E-Value=0)
          Length = 647

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -1

Query: 332 AVAGLARCFHHH*TYLLEHYQPHDPQPILQLRHQPWQPSARIARAAEV 189
           A++ + R        L  + QP  P  +L L   P   + +IARAAEV
Sbjct: 31  AISSVDRALKSSIRKLFRNTQPRSPSDLLALFRFPSPEAQQIARAAEV 78


>SB_31799| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 960

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 537 FCSENDCFNKKIIDSFISEMCLYI 608
           FCSEN   N  + D F+ +MCL I
Sbjct: 244 FCSENLQGNSGLADYFLGKMCLEI 267


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 67   NHASTRKISKPSTSASKESCSPAK*CTSSCGSIDP 171
            N  S RK   PS+  S +S  P+  CT S  +  P
Sbjct: 917  NFPSPRKTRTPSSHQSPQSAPPSSPCTPSSSTAPP 951


>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3112

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +1

Query: 88   ISKPSTSASKESCSPAK*CTSSCGS 162
            +SKPS S+S E+C+P    TSS G+
Sbjct: 1743 MSKPSVSSSGEACTPLFTDTSSFGT 1767


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,523,768
Number of Sequences: 59808
Number of extensions: 287116
Number of successful extensions: 2847
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2842
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)