Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12a08f
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc...   198   7e-52
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch...   196   2e-51
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    29   0.70 
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    27   1.6  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   2.8  
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    25   8.7  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    25   8.7  

>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  198 bits (482), Expect = 7e-52
 Identities = 92/163 (56%), Positives = 115/163 (70%)
 Frame = +1

Query: 37  MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 216
           M RYS  P    K  KARG+ LR HFKN+ E A  I  M L++A  +L NV E K+ +PF
Sbjct: 1   MVRYSASPALETKCAKARGAYLRTHFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPF 60

Query: 217 RRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVN 396
           RRFNGGVGR AQ K+FG TQ RWP KS +F   LL+NAE+NA+ K LD+D+L+I H+QVN
Sbjct: 61  RRFNGGVGRTAQGKEFGVTQARWPVKSVKFFYDLLKNAEANAEAKGLDMDKLIIKHVQVN 120

Query: 397 RAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPT 525
            AP  RRRTYRAHGR+  Y+SSP HIE+ ++E E+AV +   T
Sbjct: 121 AAPKQRRRTYRAHGRVTAYLSSPSHIEIIVAEEEEAVPKANDT 163


>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 187

 Score =  196 bits (479), Expect = 2e-51
 Identities = 92/163 (56%), Positives = 114/163 (69%)
 Frame = +1

Query: 37  MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 216
           M RYS  P    K  KARG+ LR HFKN+ E A  I  M L++A  +L NV E K+ +PF
Sbjct: 1   MVRYSAAPALETKCAKARGAYLRTHFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPF 60

Query: 217 RRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVN 396
           RRFNGGVGR AQ K+FG TQ RWP KS  F   LL+NAE+NA+ K LD+D+L+I H+QVN
Sbjct: 61  RRFNGGVGRTAQGKEFGVTQARWPVKSVNFFYDLLKNAEANAEAKGLDMDKLIIKHVQVN 120

Query: 397 RAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPT 525
            AP  RRRTYRAHGR+  Y+SSP HIE+ ++E E+AV +   T
Sbjct: 121 AAPKQRRRTYRAHGRVTAYLSSPSHIEIIVAEEEEAVPKANDT 163


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +3

Query: 366 QASYRPHSGKSRALPTQTYIPCSRS---HQPLHVVSLPHRSMS 485
           Q+ +   S K RA   +T +  ++S   HQ +H +S PH S S
Sbjct: 333 QSPFLKKSDKERANLNKTMVSINKSINIHQSIHEISCPHHSSS 375


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 97  NLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEK-KECI 210
           NLRV  K T ++ +++   P  +  RYLK ++E  K+C+
Sbjct: 102 NLRVSKKKTSKSDVSMAGFPFFKLDRYLKILVEDLKKCV 140


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 274 VLCQTALLEHSDQRRR*SDGMEYTLSFQ 191
           ++C TA+L+H D  RR   G+ + L F+
Sbjct: 846 IVCNTAVLDHWDITRRIEYGIAHILCFR 873


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -3

Query: 210 NTLFLFNHVFEVTNSTTERHLSDCHCGL-IC 121
           N   L    F V +  T + ++DC CGL +C
Sbjct: 204 NLGILLKKEFRVRHMKTPQQINDCDCGLHVC 234


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +1

Query: 94  SNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKK 201
           +N ++  K+  ETA A+RKM  +  +R L+ + ++K
Sbjct: 73  TNYKILQKSNDETAQAMRKMQDQARLRDLQKIRQQK 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,442,665
Number of Sequences: 5004
Number of extensions: 47792
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)