Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12a07r
(384 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U12465-1|AAA51648.1| 123|Homo sapiens ribosomal protein L35 pro... 124 7e-29
CR456877-1|CAG33158.1| 123|Homo sapiens RPL35 protein. 124 7e-29
BC094828-1|AAH94828.1| 123|Homo sapiens ribosomal protein L35 p... 124 7e-29
BC071915-1|AAH71915.1| 123|Homo sapiens ribosomal protein L35 p... 124 7e-29
BC010919-1|AAH10919.1| 123|Homo sapiens RPL35 protein protein. 124 7e-29
BC000348-1|AAH00348.1| 123|Homo sapiens ribosomal protein L35 p... 124 7e-29
AL354928-8|CAI39639.1| 123|Homo sapiens ribosomal protein L35 p... 124 7e-29
AL354928-7|CAI39638.1| 95|Homo sapiens ribosomal protein L35 p... 69 7e-12
AB046409-1|BAB21255.1| 33|Homo sapiens ribosomal protein L35 p... 53 4e-07
BC107597-1|AAI07598.1| 417|Homo sapiens LOC130940 protein protein. 33 0.31
BC015395-1|AAH15395.1| 255|Homo sapiens LOC130940 protein protein. 33 0.31
AK058105-1|BAB71668.1| 255|Homo sapiens protein ( Homo sapiens ... 33 0.31
AF458588-1|AAM49716.1| 591|Homo sapiens unknown protein. 33 0.31
AC019044-1|AAX88983.1| 361|Homo sapiens unknown protein. 33 0.31
BC052806-1|AAH52806.1| 128|Homo sapiens MRPL55 protein protein. 33 0.42
AY358771-1|AAQ89131.1| 164|Homo sapiens AAVG5835 protein. 33 0.42
AL136379-5|CAI23117.1| 164|Homo sapiens mitochondrial ribosomal... 33 0.42
AL136379-4|CAI23118.1| 125|Homo sapiens mitochondrial ribosomal... 33 0.42
AL136379-3|CAI23116.1| 128|Homo sapiens mitochondrial ribosomal... 33 0.42
BC034991-1|AAH34991.1| 495|Homo sapiens meiosis-specific nuclea... 30 2.2
BC031046-1|AAH31046.1| 495|Homo sapiens meiosis-specific nuclea... 30 2.2
AY237538-1|AAP04415.1| 1304|Homo sapiens KIF27C protein. 30 2.2
AK002084-1|BAA92077.1| 495|Homo sapiens protein ( Homo sapiens ... 30 2.2
>U12465-1|AAA51648.1| 123|Homo sapiens ribosomal protein L35
protein.
Length = 123
Score = 124 bits (300), Expect = 7e-29
Identities = 66/113 (58%), Positives = 76/113 (67%)
Frame = -3
Query: 340 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 161
M K+K +LR K L+ LRVAKVTGG ASKLSKIRVVRK+IARV V
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 160 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSL 2
+Q K NLR YK KKYKPLDLR KKTRAMR+ L KHE +KT+K+ RK+ L
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERL 113
>CR456877-1|CAG33158.1| 123|Homo sapiens RPL35 protein.
Length = 123
Score = 124 bits (300), Expect = 7e-29
Identities = 66/113 (58%), Positives = 76/113 (67%)
Frame = -3
Query: 340 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 161
M K+K +LR K L+ LRVAKVTGG ASKLSKIRVVRK+IARV V
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 160 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSL 2
+Q K NLR YK KKYKPLDLR KKTRAMR+ L KHE +KT+K+ RK+ L
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERL 113
>BC094828-1|AAH94828.1| 123|Homo sapiens ribosomal protein L35
protein.
Length = 123
Score = 124 bits (300), Expect = 7e-29
Identities = 66/113 (58%), Positives = 76/113 (67%)
Frame = -3
Query: 340 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 161
M K+K +LR K L+ LRVAKVTGG ASKLSKIRVVRK+IARV V
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 160 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSL 2
+Q K NLR YK KKYKPLDLR KKTRAMR+ L KHE +KT+K+ RK+ L
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERL 113
>BC071915-1|AAH71915.1| 123|Homo sapiens ribosomal protein L35
protein.
Length = 123
Score = 124 bits (300), Expect = 7e-29
Identities = 66/113 (58%), Positives = 76/113 (67%)
Frame = -3
Query: 340 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 161
M K+K +LR K L+ LRVAKVTGG ASKLSKIRVVRK+IARV V
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 160 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSL 2
+Q K NLR YK KKYKPLDLR KKTRAMR+ L KHE +KT+K+ RK+ L
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERL 113
>BC010919-1|AAH10919.1| 123|Homo sapiens RPL35 protein protein.
Length = 123
Score = 124 bits (300), Expect = 7e-29
Identities = 66/113 (58%), Positives = 76/113 (67%)
Frame = -3
Query: 340 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 161
M K+K +LR K L+ LRVAKVTGG ASKLSKIRVVRK+IARV V
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 160 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSL 2
+Q K NLR YK KKYKPLDLR KKTRAMR+ L KHE +KT+K+ RK+ L
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERL 113
>BC000348-1|AAH00348.1| 123|Homo sapiens ribosomal protein L35
protein.
Length = 123
Score = 124 bits (300), Expect = 7e-29
Identities = 66/113 (58%), Positives = 76/113 (67%)
Frame = -3
Query: 340 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 161
M K+K +LR K L+ LRVAKVTGG ASKLSKIRVVRK+IARV V
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 160 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSL 2
+Q K NLR YK KKYKPLDLR KKTRAMR+ L KHE +KT+K+ RK+ L
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERL 113
>AL354928-8|CAI39639.1| 123|Homo sapiens ribosomal protein L35
protein.
Length = 123
Score = 124 bits (300), Expect = 7e-29
Identities = 66/113 (58%), Positives = 76/113 (67%)
Frame = -3
Query: 340 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 161
M K+K +LR K L+ LRVAKVTGG ASKLSKIRVVRK+IARV V
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 160 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSL 2
+Q K NLR YK KKYKPLDLR KKTRAMR+ L KHE +KT+K+ RK+ L
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERL 113
>AL354928-7|CAI39638.1| 95|Homo sapiens ribosomal protein L35
protein.
Length = 95
Score = 68.5 bits (160), Expect = 7e-12
Identities = 39/72 (54%), Positives = 44/72 (61%)
Frame = -3
Query: 334 KVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYH 155
K+K +LR K L+ LRVAKVTGG ASKLSKIRVVRK+IARV V +
Sbjct: 2 KIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVIN 61
Query: 154 QKMKVNLRNHYK 119
Q K NLR YK
Sbjct: 62 QTQKENLRKFYK 73
>AB046409-1|BAB21255.1| 33|Homo sapiens ribosomal protein L35
protein.
Length = 33
Score = 52.8 bits (121), Expect = 4e-07
Identities = 27/33 (81%), Positives = 29/33 (87%)
Frame = -3
Query: 250 LRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQ 152
LRVAKVTGG ASKLSKIRVVRK+IARV V +Q
Sbjct: 1 LRVAKVTGGAASKLSKIRVVRKSIARVLTVINQ 33
>BC107597-1|AAI07598.1| 417|Homo sapiens LOC130940 protein protein.
Length = 417
Score = 33.1 bits (72), Expect = 0.31
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -3
Query: 139 NLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSL 2
+++N +N KYKP+D + + K L AK+K RK + L
Sbjct: 14 HMKNEMRNIKYKPVDYQQLRALTEAKKLASASAKLKIRKAMLTSKL 59
>BC015395-1|AAH15395.1| 255|Homo sapiens LOC130940 protein protein.
Length = 255
Score = 33.1 bits (72), Expect = 0.31
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -3
Query: 139 NLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSL 2
+++N +N KYKP+D + + K L AK+K RK + L
Sbjct: 14 HMKNEMRNIKYKPVDYQQLRALTEAKKLASASAKLKIRKAMLTSKL 59
>AK058105-1|BAB71668.1| 255|Homo sapiens protein ( Homo sapiens
cDNA FLJ25376 fis, clone TST02010. ).
Length = 255
Score = 33.1 bits (72), Expect = 0.31
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -3
Query: 139 NLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSL 2
+++N +N KYKP+D + + K L AK+K RK + L
Sbjct: 14 HMKNEMRNIKYKPVDYQQLRALTEAKKLASASAKLKIRKAMLTSKL 59
>AF458588-1|AAM49716.1| 591|Homo sapiens unknown protein.
Length = 591
Score = 33.1 bits (72), Expect = 0.31
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -3
Query: 139 NLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSL 2
+++N +N KYKP+D + + K L AK+K RK + L
Sbjct: 14 HMKNEMRNIKYKPVDYQQLRALTEAKKLASASAKLKIRKAMLTSKL 59
>AC019044-1|AAX88983.1| 361|Homo sapiens unknown protein.
Length = 361
Score = 33.1 bits (72), Expect = 0.31
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -3
Query: 139 NLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSL 2
+++N +N KYKP+D + + K L AK+K RK + L
Sbjct: 5 HMKNEMRNIKYKPVDYQQLRALTEAKKLASASAKLKIRKAMLTSKL 50
>BC052806-1|AAH52806.1| 128|Homo sapiens MRPL55 protein protein.
Length = 128
Score = 32.7 bits (71), Expect = 0.42
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = -3
Query: 220 ASKLSKIRVVRKAIARVY---IVYHQKMKVNLRNHYKNKKYK-PLDLRAKKTRAMRKALT 53
+S+ S RV R+A AR+Y +V +++R + P+DL R L
Sbjct: 35 SSRASLTRVHRQAYARLYPVLLVKQDGSTIHIRYREPRRMLAMPIDLDTLSPEERRARLR 94
Query: 52 KHEAKIKTRKEIRKK 8
K EA++++RKE ++
Sbjct: 95 KREAQLQSRKEYEQE 109
>AY358771-1|AAQ89131.1| 164|Homo sapiens AAVG5835 protein.
Length = 164
Score = 32.7 bits (71), Expect = 0.42
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = -3
Query: 220 ASKLSKIRVVRKAIARVY---IVYHQKMKVNLRNHYKNKKYK-PLDLRAKKTRAMRKALT 53
+S+ S RV R+A AR+Y +V +++R + P+DL R L
Sbjct: 71 SSRASLTRVHRQAYARLYPVLLVKQDGSTIHIRYREPRRMLAMPIDLDTLSPEERRARLR 130
Query: 52 KHEAKIKTRKEIRKK 8
K EA++++RKE ++
Sbjct: 131 KREAQLQSRKEYEQE 145
>AL136379-5|CAI23117.1| 164|Homo sapiens mitochondrial ribosomal
protein L55 protein.
Length = 164
Score = 32.7 bits (71), Expect = 0.42
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = -3
Query: 220 ASKLSKIRVVRKAIARVY---IVYHQKMKVNLRNHYKNKKYK-PLDLRAKKTRAMRKALT 53
+S+ S RV R+A AR+Y +V +++R + P+DL R L
Sbjct: 71 SSRASLTRVHRQAYARLYPVLLVKQDGSTIHIRYREPRRMLAMPIDLDTLSPEERRARLR 130
Query: 52 KHEAKIKTRKEIRKK 8
K EA++++RKE ++
Sbjct: 131 KREAQLQSRKEYEQE 145
>AL136379-4|CAI23118.1| 125|Homo sapiens mitochondrial ribosomal
protein L55 protein.
Length = 125
Score = 32.7 bits (71), Expect = 0.42
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = -3
Query: 220 ASKLSKIRVVRKAIARVY---IVYHQKMKVNLRNHYKNKKYK-PLDLRAKKTRAMRKALT 53
+S+ S RV R+A AR+Y +V +++R + P+DL R L
Sbjct: 32 SSRASLTRVHRQAYARLYPVLLVKQDGSTIHIRYREPRRMLAMPIDLDTLSPEERRARLR 91
Query: 52 KHEAKIKTRKEIRKK 8
K EA++++RKE ++
Sbjct: 92 KREAQLQSRKEYEQE 106
>AL136379-3|CAI23116.1| 128|Homo sapiens mitochondrial ribosomal
protein L55 protein.
Length = 128
Score = 32.7 bits (71), Expect = 0.42
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = -3
Query: 220 ASKLSKIRVVRKAIARVY---IVYHQKMKVNLRNHYKNKKYK-PLDLRAKKTRAMRKALT 53
+S+ S RV R+A AR+Y +V +++R + P+DL R L
Sbjct: 35 SSRASLTRVHRQAYARLYPVLLVKQDGSTIHIRYREPRRMLAMPIDLDTLSPEERRARLR 94
Query: 52 KHEAKIKTRKEIRKK 8
K EA++++RKE ++
Sbjct: 95 KREAQLQSRKEYEQE 109
>BC034991-1|AAH34991.1| 495|Homo sapiens meiosis-specific nuclear
structural 1 protein.
Length = 495
Score = 30.3 bits (65), Expect = 2.2
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Frame = -3
Query: 199 RVVRKAIARVYI--VYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEA--KIK 32
RV RK R+ + M+ ++ +NK+ K L L+ ++ AM A KHE+ K
Sbjct: 50 RVQRKQFLRLLQNEQFELDMEEAIQKAEENKRLKELQLKQEEKLAMELAKLKHESLKDEK 109
Query: 31 TRKEIRKKSL 2
R+++R+ S+
Sbjct: 110 MRQQVRENSI 119
>BC031046-1|AAH31046.1| 495|Homo sapiens meiosis-specific nuclear
structural 1 protein.
Length = 495
Score = 30.3 bits (65), Expect = 2.2
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Frame = -3
Query: 199 RVVRKAIARVYI--VYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEA--KIK 32
RV RK R+ + M+ ++ +NK+ K L L+ ++ AM A KHE+ K
Sbjct: 50 RVQRKQFLRLLQNEQFELDMEEAIQKAEENKRLKELQLKQEEKLAMELAKLKHESLKDEK 109
Query: 31 TRKEIRKKSL 2
R+++R+ S+
Sbjct: 110 MRQQVRENSI 119
>AY237538-1|AAP04415.1| 1304|Homo sapiens KIF27C protein.
Length = 1304
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = -3
Query: 157 HQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSL 2
+QK+++ + +N+K K LD K+ + KAL KI TR + ++ L
Sbjct: 850 YQKIQLQRKLREENEKRKQLDAVIKRDQQKIKALNTDSLKISTRLNLLEQEL 901
>AK002084-1|BAA92077.1| 495|Homo sapiens protein ( Homo sapiens
cDNA FLJ11222 fis, clone PLACE1008177. ).
Length = 495
Score = 30.3 bits (65), Expect = 2.2
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Frame = -3
Query: 199 RVVRKAIARVYI--VYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEA--KIK 32
RV RK R+ + M+ ++ +NK+ K L L+ ++ AM A KHE+ K
Sbjct: 50 RVQRKQFLRLLQNEQFELDMEEAIQKAEENKRLKELQLKQEEKLAMELAKLKHESLKDEK 109
Query: 31 TRKEIRKKSL 2
R+++R+ S+
Sbjct: 110 MRQQVRENSI 119
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,638,762
Number of Sequences: 237096
Number of extensions: 634846
Number of successful extensions: 1555
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1552
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2583773550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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