Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12a07r
         (384 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-771|AAF46058.2|  123|Drosophila melanogaster CG4111-PA,...   142   2e-34
AE014298-770|AAN09148.1|  123|Drosophila melanogaster CG4111-PB,...   142   2e-34
AY118364-1|AAM48393.1|  123|Drosophila melanogaster RE09547p pro...   141   3e-34

>AE014298-771|AAF46058.2|  123|Drosophila melanogaster CG4111-PA,
           isoform A protein.
          Length = 123

 Score =  142 bits (343), Expect = 2e-34
 Identities = 76/113 (67%), Positives = 83/113 (73%)
 Frame = -3

Query: 340 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 161
           M KVKCSELR KD              L +LRVAKVTGG  SKLSKIRVVRKAIARVYIV
Sbjct: 1   MVKVKCSELRIKDKKELTKQLDELKNELLSLRVAKVTGGAPSKLSKIRVVRKAIARVYIV 60

Query: 160 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSL 2
            HQK K NLR  +KNKKYKPLDLR KKTRA+RKAL+  +A  KT KEIRK+S+
Sbjct: 61  MHQKQKENLRKVFKNKKYKPLDLRKKKTRAIRKALSPRDANRKTLKEIRKRSV 113


>AE014298-770|AAN09148.1|  123|Drosophila melanogaster CG4111-PB,
           isoform B protein.
          Length = 123

 Score =  142 bits (343), Expect = 2e-34
 Identities = 76/113 (67%), Positives = 83/113 (73%)
 Frame = -3

Query: 340 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 161
           M KVKCSELR KD              L +LRVAKVTGG  SKLSKIRVVRKAIARVYIV
Sbjct: 1   MVKVKCSELRIKDKKELTKQLDELKNELLSLRVAKVTGGAPSKLSKIRVVRKAIARVYIV 60

Query: 160 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSL 2
            HQK K NLR  +KNKKYKPLDLR KKTRA+RKAL+  +A  KT KEIRK+S+
Sbjct: 61  MHQKQKENLRKVFKNKKYKPLDLRKKKTRAIRKALSPRDANRKTLKEIRKRSV 113


>AY118364-1|AAM48393.1|  123|Drosophila melanogaster RE09547p
           protein.
          Length = 123

 Score =  141 bits (341), Expect = 3e-34
 Identities = 76/113 (67%), Positives = 83/113 (73%)
 Frame = -3

Query: 340 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 161
           M KVKCSELR KD              L +LRVAKVTGG  SKLSKIRVVRKAIARVYIV
Sbjct: 1   MVKVKCSELRIKDKKELTKQLDELKNELLSLRVAKVTGGSPSKLSKIRVVRKAIARVYIV 60

Query: 160 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSL 2
            HQK K NLR  +KNKKYKPLDLR KKTRA+RKAL+  +A  KT KEIRK+S+
Sbjct: 61  MHQKQKENLRKVFKNKKYKPLDLRKKKTRAIRKALSPRDANRKTLKEIRKRSV 113


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,194,699
Number of Sequences: 53049
Number of extensions: 201976
Number of successful extensions: 866
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1045179750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)