Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12a07f
(442 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0340 + 17946133-17946136,17946207-17946342,17946428-179465... 98 2e-21
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086... 55 2e-08
02_01_0228 + 1507314-1507566,1507645-1507913,1508010-1508213,150... 29 1.7
12_02_0172 - 14891923-14892102,14892894-14892980 28 2.9
09_04_0512 + 18226981-18227143,18227648-18229555,18229649-182302... 28 2.9
08_02_0431 + 17053928-17054189,17054296-17054564,17054661-170548... 28 2.9
07_01_0794 - 6179424-6179714,6179797-6179844,6180189-6180248,618... 28 2.9
12_01_0152 - 1168928-1169377 28 3.8
11_01_0155 - 1287003-1287452 28 3.8
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 27 5.1
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 27 5.1
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962... 27 5.1
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 27 5.1
04_04_1462 - 33769122-33769151,33769385-33769426,33769571-337701... 27 6.7
04_04_0623 + 26669284-26669421,26670906-26671564,26671948-266721... 27 8.8
>02_03_0340 +
17946133-17946136,17946207-17946342,17946428-17946584,
17947330-17947458
Length = 141
Score = 98.3 bits (234), Expect = 2e-21
Identities = 60/141 (42%), Positives = 77/141 (54%), Gaps = 18/141 (12%)
Frame = +3
Query: 45 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 224
M ++K ELR K+ + LRVAKVTGG +KLSKI+VVR +IARV V
Sbjct: 1 MARIKVDELRGKNKAELQAQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRTSIARVLTV 60
Query: 225 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKH------------------EAKI 350
QK + LR YK K PLDLR KKTRA+R+ LTKH + +
Sbjct: 61 ISQKQRAALREAYKKKSLLPLDLRPKKTRAIRRRLTKHQLCYTCIRLLTFSMVAISQLSL 120
Query: 351 KTRKEIRKKSLFPPRVYAVKA 413
KT +E +++ FP R YA+KA
Sbjct: 121 KTEREKKREKYFPMRKYAIKA 141
>06_03_1515 -
30707600-30707613,30708093-30708167,30708596-30708647,
30708751-30708831,30709145-30709219,30709870-30709977,
30710026-30710032,30710133-30710268,30710361-30710685
Length = 290
Score = 55.2 bits (127), Expect = 2e-08
Identities = 39/106 (36%), Positives = 52/106 (49%)
Frame = +3
Query: 33 VTVKMGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIAR 212
VTV M ++K LR ++ + LRVA+VTGG +KLS I+ VR A+
Sbjct: 104 VTVAMARIKVDVLRGRNKAELQAQLKDLKAELSVLRVARVTGGAPNKLSNIK-VRTALRE 162
Query: 213 VYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKI 350
Y K K PLDLR KKT A+R+ LTKH+ +
Sbjct: 163 AY-------------KKKKKSLLPLDLRPKKTCAIRRRLTKHQGML 195
>02_01_0228 +
1507314-1507566,1507645-1507913,1508010-1508213,
1508323-1508415,1508509-1508604,1508688-1509032,
1509123-1509191,1509284-1509367,1509455-1509520,
1509735-1509800,1509934-1509999,1510097-1510162,
1510280-1510327,1510406-1510468,1510554-1510619,
1510782-1510841,1511185-1511232,1511315-1511605
Length = 750
Score = 29.1 bits (62), Expect = 1.7
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +3
Query: 243 VNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAK--IKTRKEIRKKSLFPPRVYAVKA 413
+ L NH+ N+K K + + KK +KA+ K +TR+E+R+K P + Y +A
Sbjct: 230 IALVNHWMNEKSKRISEQNKKNCQKKKAIHTAGTKSFARTREEMRQKD--PAKKYPHRA 286
>12_02_0172 - 14891923-14892102,14892894-14892980
Length = 88
Score = 28.3 bits (60), Expect = 2.9
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +3
Query: 141 VAKVTGGVASKLSKIRVVRKAIARVY--IVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRA 314
+A + GV K+S A R +V H+ +++ RNH ++KY+ L +
Sbjct: 1 MANLQVGVTRKISDPNTKAVATDRTIRNLVCHEDLRLTCRNHLSHQKYRS-SLLGETPGR 59
Query: 315 MRKALTK 335
R+A TK
Sbjct: 60 SRRAKTK 66
>09_04_0512 + 18226981-18227143,18227648-18229555,18229649-18230295,
18230710-18231949,18232085-18232419,18232500-18232577,
18232872-18232978,18233020-18233062
Length = 1506
Score = 28.3 bits (60), Expect = 2.9
Identities = 21/85 (24%), Positives = 38/85 (44%)
Frame = +3
Query: 135 LRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRA 314
L A+ + K R +RKA A++ ++ K + + KK + D+ AKK +
Sbjct: 1329 LEAAEAAKRLEEKKQNEREMRKAAAKLERERLKQEKELKQKQEEQKKKRDADVAAKKRQR 1388
Query: 315 MRKALTKHEAKIKTRKEIRKKSLFP 389
+ + + K K +E RK+ P
Sbjct: 1389 GEEERKEKQRKRKCTEEARKQQKQP 1413
>08_02_0431 +
17053928-17054189,17054296-17054564,17054661-17054864,
17054974-17055066,17055160-17055255,17055339-17055683,
17055935-17056018,17056106-17056171,17056268-17056333,
17056436-17056501,17056635-17056700,17056798-17056863,
17056981-17057028,17057107-17057169,17057255-17057320,
17057483-17057542,17057888-17057935,17058019-17058255,
17058346-17058366
Length = 741
Score = 28.3 bits (60), Expect = 2.9
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +3
Query: 243 VNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAK--IKTRKEIRKK 377
+ L NH+ N+K K + + KK +KA+ K +TR+E+R+K
Sbjct: 233 IALVNHWMNEKSKRISEQNKKNCQKKKAIHTAGTKSFARTREEMRQK 279
>07_01_0794 -
6179424-6179714,6179797-6179844,6180189-6180248,
6180411-6180476,6180562-6180624,6180703-6180750,
6180868-6180933,6181031-6181096,6181230-6181295,
6181510-6181575,6181663-6181746,6181839-6181907,
6181998-6182342,6182426-6182521,6182615-6182707,
6182817-6183020,6183117-6183385,6183492-6183753
Length = 753
Score = 28.3 bits (60), Expect = 2.9
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +3
Query: 243 VNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAK--IKTRKEIRKK 377
+ L NH+ N+K K + + KK +KA+ K +TR+E+R+K
Sbjct: 233 IALVNHWMNEKSKRISEQNKKNCQKKKAIHTAGTKSFARTREEMRQK 279
>12_01_0152 - 1168928-1169377
Length = 149
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 147 KVTGGVASKLSKIRVVRKAIARVYIVYHQK 236
+V GG K S+I +R+AIA+ + Y+QK
Sbjct: 74 RVRGG--GKTSQIYAIRQAIAKALVAYYQK 101
>11_01_0155 - 1287003-1287452
Length = 149
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 147 KVTGGVASKLSKIRVVRKAIARVYIVYHQK 236
+V GG K S+I +R+AIA+ + Y+QK
Sbjct: 74 RVRGG--GKTSQIYAIRQAIAKALVAYYQK 101
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 27.5 bits (58), Expect = 5.1
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 273 KYKPLDLRAKKTRAMRKALTKHEAK-IKTRKEI 368
KY+P D AKK R +++A + E K ++ +K I
Sbjct: 94 KYRPEDKAAKKERLLKRAQAEAEGKTVEAKKPI 126
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 27.5 bits (58), Expect = 5.1
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 273 KYKPLDLRAKKTRAMRKALTKHEAK-IKTRKEI 368
KY+P D AKK R +++A + E K ++ +K I
Sbjct: 78 KYRPEDKAAKKERLLKRAQAEAEGKTVEAKKPI 110
>04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,
9625520-9626032,9626801-9629153
Length = 1342
Score = 27.5 bits (58), Expect = 5.1
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +3
Query: 252 RNHYKN--KKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVK 410
RNH N K PL + +K M+K++ + T E K +FPP Y K
Sbjct: 1048 RNHINNLAKLAGPLYAKLRKN-GMKKSMNYSGVEFFTFGEDNKLKVFPPNTYKFK 1101
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 27.5 bits (58), Expect = 5.1
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 228 HQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKE 365
H K + ++ NK+ L L+ K+ + + L + E KI R+E
Sbjct: 270 HTKATLKIKEDDINKRLAELHLQEKEAESKNRKLEEREKKIAEREE 315
>04_04_1462 -
33769122-33769151,33769385-33769426,33769571-33770158,
33770398-33770508,33770585-33770625,33771238-33771382,
33771578-33771781,33772626-33772769,33772991-33773183,
33774559-33774602,33774694-33774822,33774907-33774954,
33775058-33775120,33775198-33775236,33776694-33776767,
33777460-33777518,33777709-33777768,33777920-33778044,
33778693-33778751,33779418-33779511,33779572-33779625,
33779775-33779813,33780423-33780602
Length = 854
Score = 27.1 bits (57), Expect = 6.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 174 LSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDL 293
+SK ++K + R + HQ +K +L K +Y PLDL
Sbjct: 610 ISKENSIKKQVTRYKM--HQHLKFHLGEISKTSEYDPLDL 647
>04_04_0623 +
26669284-26669421,26670906-26671564,26671948-26672140,
26672220-26672284,26672399-26672609,26673284-26673515,
26674463-26674521,26674651-26674680,26674761-26674850
Length = 558
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -3
Query: 239 HLLVIHNVNTCDSFSYNTDLG 177
H +HN N CDS Y D G
Sbjct: 396 HYWPVHNDNKCDSIKYAVDWG 416
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,818,482
Number of Sequences: 37544
Number of extensions: 131778
Number of successful extensions: 399
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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