Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12a07f
         (442 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-771|AAF46058.2|  123|Drosophila melanogaster CG4111-PA,...   156   1e-38
AE014298-770|AAN09148.1|  123|Drosophila melanogaster CG4111-PB,...   156   1e-38
AY118364-1|AAM48393.1|  123|Drosophila melanogaster RE09547p pro...   155   3e-38
BT030434-1|ABO52854.1|  492|Drosophila melanogaster IP18315p pro...    31   0.70 
AY122185-1|AAM52697.1|  310|Drosophila melanogaster LD42289p pro...    29   2.1  
AE014134-1700|AAF52815.1|  304|Drosophila melanogaster CG4036-PA...    29   2.1  

>AE014298-771|AAF46058.2|  123|Drosophila melanogaster CG4111-PA,
           isoform A protein.
          Length = 123

 Score =  156 bits (378), Expect = 1e-38
 Identities = 82/123 (66%), Positives = 90/123 (73%)
 Frame = +3

Query: 45  MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 224
           M KVKCSELR KD                +LRVAKVTGG  SKLSKIRVVRKAIARVYIV
Sbjct: 1   MVKVKCSELRIKDKKELTKQLDELKNELLSLRVAKVTGGAPSKLSKIRVVRKAIARVYIV 60

Query: 225 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYA 404
            HQK K NLR  +KNKKYKPLDLR KKTRA+RKAL+  +A  KT KEIRK+S+FP R +A
Sbjct: 61  MHQKQKENLRKVFKNKKYKPLDLRKKKTRAIRKALSPRDANRKTLKEIRKRSVFPQRKFA 120

Query: 405 VKA 413
           VKA
Sbjct: 121 VKA 123


>AE014298-770|AAN09148.1|  123|Drosophila melanogaster CG4111-PB,
           isoform B protein.
          Length = 123

 Score =  156 bits (378), Expect = 1e-38
 Identities = 82/123 (66%), Positives = 90/123 (73%)
 Frame = +3

Query: 45  MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 224
           M KVKCSELR KD                +LRVAKVTGG  SKLSKIRVVRKAIARVYIV
Sbjct: 1   MVKVKCSELRIKDKKELTKQLDELKNELLSLRVAKVTGGAPSKLSKIRVVRKAIARVYIV 60

Query: 225 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYA 404
            HQK K NLR  +KNKKYKPLDLR KKTRA+RKAL+  +A  KT KEIRK+S+FP R +A
Sbjct: 61  MHQKQKENLRKVFKNKKYKPLDLRKKKTRAIRKALSPRDANRKTLKEIRKRSVFPQRKFA 120

Query: 405 VKA 413
           VKA
Sbjct: 121 VKA 123


>AY118364-1|AAM48393.1|  123|Drosophila melanogaster RE09547p
           protein.
          Length = 123

 Score =  155 bits (376), Expect = 3e-38
 Identities = 82/123 (66%), Positives = 90/123 (73%)
 Frame = +3

Query: 45  MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 224
           M KVKCSELR KD                +LRVAKVTGG  SKLSKIRVVRKAIARVYIV
Sbjct: 1   MVKVKCSELRIKDKKELTKQLDELKNELLSLRVAKVTGGSPSKLSKIRVVRKAIARVYIV 60

Query: 225 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYA 404
            HQK K NLR  +KNKKYKPLDLR KKTRA+RKAL+  +A  KT KEIRK+S+FP R +A
Sbjct: 61  MHQKQKENLRKVFKNKKYKPLDLRKKKTRAIRKALSPRDANRKTLKEIRKRSVFPQRKFA 120

Query: 405 VKA 413
           VKA
Sbjct: 121 VKA 123


>BT030434-1|ABO52854.1|  492|Drosophila melanogaster IP18315p
           protein.
          Length = 492

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 440 FFXILIIYSSFNGIDSRWEERFLSDLFPRLDLCFV 336
           F   L  Y++F   + +W +  + D+F RL LCFV
Sbjct: 39  FCNSLKTYTTFFDDNIQWSQMVIKDIFQRLQLCFV 73


>AY122185-1|AAM52697.1|  310|Drosophila melanogaster LD42289p
           protein.
          Length = 310

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/68 (29%), Positives = 31/68 (45%)
 Frame = +2

Query: 185 PCCKKSYRTCLHCVSPEDEGQS*KPLQKQEIQAFRFKSQEDPCYAQGSY*TRSKDQDEER 364
           PC  K  RTCL C       ++    Q Q+++A+ +  Q D    Q  + T    +D E 
Sbjct: 12  PCGCKGVRTCLSCEQDFHIAKTSLREQFQQLEAWSYCIQCD--LLQRGWDTNHVQKDHEN 69

Query: 365 DQKEISLP 388
            +K+  LP
Sbjct: 70  HKKDEGLP 77


>AE014134-1700|AAF52815.1|  304|Drosophila melanogaster CG4036-PA
           protein.
          Length = 304

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/68 (29%), Positives = 31/68 (45%)
 Frame = +2

Query: 185 PCCKKSYRTCLHCVSPEDEGQS*KPLQKQEIQAFRFKSQEDPCYAQGSY*TRSKDQDEER 364
           PC  K  RTCL C       ++    Q Q+++A+ +  Q D    Q  + T    +D E 
Sbjct: 6   PCGCKGVRTCLSCEQDFHIAKTSLREQFQQLEAWSYCIQCD--LLQRGWDTNHVQKDHEN 63

Query: 365 DQKEISLP 388
            +K+  LP
Sbjct: 64  HKKDEGLP 71


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,039,031
Number of Sequences: 53049
Number of extensions: 235430
Number of successful extensions: 999
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1417837128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)