Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12a05r
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    45   1e-05
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    44   2e-05
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    39   9e-04
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    28   1.6  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    27   2.2  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    27   3.8  
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    27   3.8  
SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi...    27   3.8  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    26   6.6  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    25   8.7  

>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 24/56 (42%), Positives = 31/56 (55%)
 Frame = -3

Query: 717 KIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQATSE 550
           KIDAT ND   S   +SGFPTI +   +    P RY G R LED   ++ + A+ E
Sbjct: 412 KIDATENDISVS---ISGFPTIMFFKANDKVNPVRYEGDRTLEDLSAFIDKHASFE 464



 Score = 29.1 bits (62), Expect = 0.71
 Identities = 14/59 (23%), Positives = 31/59 (52%)
 Frame = -3

Query: 720 IKIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQATSELK 544
           +++D T      S++ + G+PT+      + K+  +Y+G R  +  +KY+ +Q    +K
Sbjct: 76  VEVDCTEEGDLCSEYSIRGYPTL--NVFKNGKQISQYSGPRKHDALVKYMRKQLLPTVK 132


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 17/42 (40%), Positives = 30/42 (71%)
 Frame = -3

Query: 675 DVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQATSE 550
           +V+ FPTI + PKD   KP+ Y G R+LE  I+Y+++++ ++
Sbjct: 211 EVASFPTIKFFPKDDKDKPELYEGDRSLESLIEYINKKSGTQ 252



 Score = 42.7 bits (96), Expect = 5e-05
 Identities = 18/52 (34%), Positives = 32/52 (61%)
 Frame = -3

Query: 717 KIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQ 562
           KIDA  +     ++ ++GFPT+ W P D S +P +Y+  R ++   ++VSE+
Sbjct: 78  KIDADTHSDVADKYHITGFPTLIWFPPDGS-EPVQYSNARDVDSLTQFVSEK 128


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 38.7 bits (86), Expect = 9e-04
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = -3

Query: 720 IKIDATANDWPKSQFDVSGFPTI---FWKPKDSSKKPQRYNGGRALEDFIKYVSEQATSE 550
           +  DA  N    SQ+ V GFPTI   +   K SS     YNG R+ +   K+VS+   S+
Sbjct: 86  VDCDADQNRAVCSQYQVQGFPTIKLVYPSSKGSSLSSTDYNGDRSYKSLQKFVSDSIPSK 145

Query: 549 LK 544
           +K
Sbjct: 146 VK 147


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +2

Query: 323 ERQCLCTQRM-LFISAFPWTDITHINSEVIFHCFSHYIHP 439
           E + +C   + +F   FP   +  +N +V+ HC SH   P
Sbjct: 594 EHRAMCAFILSVFCRGFPQGQLACLNPQVLSHCLSHLNSP 633


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 277 SVNMMVNECNITIARGTTMSLYPKNAFHICFPLDRYNTH 393
           +V +  N  N++    TT+S+   +   IC P+D+ NTH
Sbjct: 543 TVKLEDNTVNLSFVNETTVSV---DKVVICIPMDKLNTH 578


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 359 ISAFPWTDITHINSEV-IFHCFSHYIHPSHKYT-RRSFMESF 478
           IS   +TD   INS +  F CF H + PS K T   +F+E F
Sbjct: 780 ISRCSFTDF-EINSILNFFFCFLHTVEPSGKLTFELAFLEIF 820


>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = -1

Query: 320 LAIVMLHSLTIIFTDNRSRITLLDLQNNTDA*TQFHLSLLSVYGA 186
           LA++ LH L I++ D +    LLD + +    T F LS ++  GA
Sbjct: 201 LALIHLHKLGIVYRDLKPENCLLDAEGHI-LLTDFGLSKVAENGA 244


>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
           Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +1

Query: 55  QLM*LIYHPQVE---VYQYTTYDNTSDFYKNV 141
           Q+M ++ HP +     Y YTT DN+ + Y N+
Sbjct: 75  QIMRIMKHPNIVDLIAYYYTTGDNSDEVYLNL 106


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 648 WKPKDSSKKPQRYNGGRALEDFIKYVSEQATSELKGWDRKG 526
           W+  D  + P++YN    LE + KY    AT+ L+G    G
Sbjct: 112 WQ-SDHKRLPEKYNQMVCLEAYRKYPPVCATAGLRGIQNLG 151


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -3

Query: 675 DVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQATSELK 544
           +VS FP I  + + SSK P++ +    LE  IK+VS    + ++
Sbjct: 465 NVSDFPQIVEQEELSSKNPRKVHFSDTLE--IKHVSRSGKANIE 506


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,234,441
Number of Sequences: 5004
Number of extensions: 70776
Number of successful extensions: 218
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)