Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12a05r
(749 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0410 - 3234455-3234466,3234851-3234950,3235037-3235161,323... 47 2e-05
11_01_0618 - 4941906-4942118,4942231-4942343,4942534-4942651,494... 44 1e-04
01_03_0161 + 13337265-13337297,13337880-13338017,13338211-133383... 44 2e-04
02_01_0001 - 3864-4049,4861-4917,5514-5648,5710-5808,5884-5952,6... 35 0.079
06_01_0452 + 3198475-3198962,3199062-3199191,3199332-3199497,319... 34 0.10
03_02_0810 + 11429776-11429985,11430003-11430935 34 0.14
07_03_1473 + 26756338-26757583,26759067-26759472,26760867-267609... 33 0.18
11_04_0032 + 12545208-12545954 32 0.56
08_02_0206 + 14286721-14287239,14291236-14291466,14291557-14292030 31 1.3
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420... 30 1.7
02_02_0554 - 11434744-11435364,11435741-11436442 30 1.7
11_04_0046 + 12751830-12752285,12752385-12752670,12753329-12753786 29 3.0
08_02_0360 + 16196712-16197560,16198126-16198875 29 3.0
08_02_0118 + 12772636-12772910,12773151-12773254,12774097-127744... 29 3.0
04_01_0251 - 3294223-3294272,3295189-3295264,3295789-3296052,329... 29 3.0
03_05_0310 + 23008915-23009841,23010401-23011162 29 3.0
09_04_0345 + 16876489-16876614,16876718-16876876,16877989-168781... 29 3.9
05_05_0168 + 22875488-22876072 29 3.9
11_06_0121 - 20330511-20330707,20332250-20332343 29 5.2
10_07_0030 - 12044953-12045524,12045567-12045876 29 5.2
11_04_0010 - 12139533-12139571,12140893-12141230,12141235-12141721 28 6.9
04_02_0034 - 8999618-9000358,9001439-9001618,9001666-9003621,900... 28 6.9
03_02_0811 + 11437654-11438958 28 6.9
03_02_0809 + 11419318-11420493 28 6.9
01_05_0573 + 23359968-23361044,23361112-23361255,23361458-23361841 28 6.9
12_01_1102 + 11622839-11623341,11623441-11623750 28 9.1
>05_01_0410 -
3234455-3234466,3234851-3234950,3235037-3235161,
3235244-3235400,3235644-3235735,3235828-3235855,
3235949-3236066,3236411-3236466,3236556-3236653,
3236864-3236948,3237428-3237600
Length = 347
Score = 46.8 bits (106), Expect = 2e-05
Identities = 22/58 (37%), Positives = 35/58 (60%)
Frame = -3
Query: 717 KIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQATSELK 544
K+D + S++ VSG+PTI W PK S +P++Y G R E +YV+ +A + +K
Sbjct: 86 KVDCDEHKSVCSKYGVSGYPTIQWFPK-GSLEPKKYEGQRTAEALAEYVNSEAATNVK 142
Score = 45.2 bits (102), Expect = 6e-05
Identities = 20/51 (39%), Positives = 35/51 (68%)
Frame = -3
Query: 714 IDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQ 562
+DA + ++ VSGFPT+ + PK +K + Y+GGR L+DF+K+++E+
Sbjct: 206 LDADKHTALAEKYGVSGFPTLKFFPK-GNKAGEDYDGGRELDDFVKFINEK 255
>11_01_0618 -
4941906-4942118,4942231-4942343,4942534-4942651,
4942762-4942881,4942964-4943101,4943392-4943517,
4943659-4943847,4943951-4944238,4944344-4944374,
4945014-4945216
Length = 512
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Frame = -3
Query: 717 KIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYV--SEQATSELK 544
K+DATAND P S+FDV G+PT+++ P Y GR ++ + ++ +++ + K
Sbjct: 441 KMDATANDVP-SEFDVQGYPTLYFVTPSGKMVP--YESGRTADEIVDFIKKNKETAGQAK 497
Query: 543 GWDRKGNAKQGKEEL 499
A+ K+EL
Sbjct: 498 EKAESAPAEPLKDEL 512
>01_03_0161 +
13337265-13337297,13337880-13338017,13338211-13338308,
13338395-13338450,13338664-13338781,13338889-13338916,
13339021-13339112,13339321-13339477,13339569-13339693,
13339785-13339884,13339991-13340059
Length = 337
Score = 43.6 bits (98), Expect = 2e-04
Identities = 19/51 (37%), Positives = 35/51 (68%)
Frame = -3
Query: 714 IDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQ 562
+DA + ++ VSG+PT+ + PK +K + Y+GGR L+DF+K+++E+
Sbjct: 177 LDADKHKDLAEKYGVSGYPTLKFFPK-GNKAGEDYDGGRELDDFVKFINEK 226
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/58 (34%), Positives = 35/58 (60%)
Frame = -3
Query: 717 KIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQATSELK 544
K+D + S++ VSG+PTI W PK S +P++Y G R+ E ++V+ + + +K
Sbjct: 57 KVDCDEHKSVCSKYGVSGYPTIQWFPK-GSLEPKKYEGQRSAEALAEFVNTEGGTNVK 113
>02_01_0001 -
3864-4049,4861-4917,5514-5648,5710-5808,5884-5952,
6419-6493,6619-6705,6873-6953,7021-7163,7262-7430,
7538-7667,7753-8255
Length = 577
Score = 34.7 bits (76), Expect = 0.079
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = -3
Query: 717 KIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQ 562
K+DAT + ++DV GFPTI + P+ YNG R E + +V+++
Sbjct: 130 KVDATEDTDLAQKYDVQGFPTILF---FIDGVPKDYNGARTKEAIVSWVNKK 178
>06_01_0452 +
3198475-3198962,3199062-3199191,3199332-3199497,
3199765-3199883,3200056-3200136,3200236-3200322,
3200644-3200715,3200791-3200859,3201349-3201426,
3201540-3201680,3202333-3202386,3202465-3202581
Length = 533
Score = 34.3 bits (75), Expect = 0.10
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = -3
Query: 717 KIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQ 562
+IDA+ N+ PK Q ++ +PT+ P P + + L+D K+V E+
Sbjct: 465 RIDASVNEHPKLQ--INNYPTLLLYPAQDKSNPIKLSKKSNLKDMAKFVKEK 514
>03_02_0810 + 11429776-11429985,11430003-11430935
Length = 380
Score = 33.9 bits (74), Expect = 0.14
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 442 TQIHTQIFHGKF*ITTARLQLFLSLFGVTLSVPALKFACGLFRN 573
T ++T ++ K +TT +++ FG SVP + F CGLF N
Sbjct: 111 TCVYTYYYNDKS-VTTGLIEVDKFTFGAGASVPGVAFGCGLFNN 153
>07_03_1473 +
26756338-26757583,26759067-26759472,26760867-26760930,
26760975-26761055,26763350-26763588,26763689-26763947,
26764359-26764538,26764937-26765092,26765174-26765350
Length = 935
Score = 33.5 bits (73), Expect = 0.18
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = -3
Query: 660 PTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQATSELKGWDRKGNAKQGKEE 502
P + + P++ K + NG ++ + SE+A+S L + KG+ QGKEE
Sbjct: 313 PALLYLPRNG--KHVKINGNLVIKSIV--ASEKASSRLSNYGEKGSGNQGKEE 361
>11_04_0032 + 12545208-12545954
Length = 248
Score = 31.9 bits (69), Expect = 0.56
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = -1
Query: 704 LQMTGPNHNSTFPASPQSSGSLRTAPRNLRDIMEDVL*RTSSSMFLNKPQANLRAGTERV 525
LQ G HN P PQ+SG T+ + +++I++ + S P A T
Sbjct: 19 LQELGAQHNIATPYHPQTSGQAETSNKQIKNILQKTVDEMGKSWKNKLPDALWAYRTAYK 78
Query: 524 TP 519
TP
Sbjct: 79 TP 80
>08_02_0206 + 14286721-14287239,14291236-14291466,14291557-14292030
Length = 407
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -1
Query: 704 LQMTGPNHNSTFPASPQSSGSLRTAPRNLRDIME 603
L+ G HN P PQ+SG T+ +++++IM+
Sbjct: 91 LREMGAKHNVATPYHPQTSGQAETSNKHIKNIMQ 124
>04_01_0312 +
4206400-4206627,4206661-4207269,4207425-4207902,
4208006-4208297,4209278-4209569,4210013-4210465
Length = 783
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -1
Query: 704 LQMTGPNHNSTFPASPQSSGSLRTAPRNLRDIMEDVL 594
L+ G HN P PQ+SG T+ + +++I++ ++
Sbjct: 682 LREMGAKHNVATPYHPQTSGQAETSNKQIKNILQKIV 718
>02_02_0554 - 11434744-11435364,11435741-11436442
Length = 440
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 704 LQMTGPNHNSTFPASPQSSGSLRTAPRNLRDIME 603
LQ G HN P PQ+SG T+ + +++I++
Sbjct: 46 LQDMGAKHNVATPYHPQTSGQAETSNKQIKNILQ 79
>11_04_0046 + 12751830-12752285,12752385-12752670,12753329-12753786
Length = 399
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -1
Query: 704 LQMTGPNHNSTFPASPQSSGSLRTAPRNLRDIMEDVL 594
L+ G HN P PQ+SG T+ + +++I++ +
Sbjct: 117 LREMGAKHNVATPYHPQTSGQAETSNKQIKNILQKTI 153
>08_02_0360 + 16196712-16197560,16198126-16198875
Length = 532
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 704 LQMTGPNHNSTFPASPQSSGSLRTAPRNLRDIME 603
L+ G HN P PQ+SG T + +++IM+
Sbjct: 91 LREMGAKHNVATPYHPQTSGQAETLNKQIKNIMQ 124
>08_02_0118 +
12772636-12772910,12773151-12773254,12774097-12774487,
12774795-12774870,12775030-12775047
Length = 287
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = -1
Query: 704 LQMTGPNHNSTFPASPQSSGSLRTAPRNLRDIMEDVL*RTSSSMFLNKPQANLRAGTERV 525
L+ G HN P PQ+SG T+ + +++I++ + + + P A T
Sbjct: 19 LREMGAKHNVATPYHPQTSGQAETSNKQIKNILQKTVNKMGTGWKDRLPDALWAYRTAYK 78
Query: 524 TP 519
TP
Sbjct: 79 TP 80
>04_01_0251 -
3294223-3294272,3295189-3295264,3295789-3296052,
3296278-3296531,3296826-3296929,3297204-3297679
Length = 407
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 704 LQMTGPNHNSTFPASPQSSGSLRTAPRNLRDIME 603
LQ G HN P PQ+SG T+ + +++I++
Sbjct: 117 LQDMGAKHNVATPYYPQTSGQAETSNKQMKNIVQ 150
>03_05_0310 + 23008915-23009841,23010401-23011162
Length = 562
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = -1
Query: 704 LQMTGPNHNSTFPASPQSSGSLRTAPRNLRDIMEDVL*RTSSSMFLNKPQANLRAGTERV 525
L+ G HN P PQ+SG T+ + +++I++ + + + P A T
Sbjct: 117 LREMGAKHNVATPYHPQTSGQAETSNKQIKNILQKTVNKMGTGWKDRLPDALWAYRTAYK 176
Query: 524 TP 519
TP
Sbjct: 177 TP 178
>09_04_0345 +
16876489-16876614,16876718-16876876,16877989-16878102,
16878701-16878882,16879142-16879241,16879597-16879638,
16879818-16879994,16880084-16880175,16880633-16880779,
16880832-16881036
Length = 447
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = -3
Query: 714 IDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQATSELK 544
+DA A+ ++ + GFPTI K K P Y G R ++ +++ Q + L+
Sbjct: 85 LDADAHKELAQEYGIRGFPTI--KVFVPGKPPVDYQGARDVKPIVEFALSQVKALLR 139
>05_05_0168 + 22875488-22876072
Length = 194
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3
Query: 672 VSGFPTIFWKPKDSSKKPQRYNGGRALED 586
+ G P ++P+DSS P GG ++D
Sbjct: 93 IGGLPVTLYRPRDSSSPPAGKGGGGGVDD 121
>11_06_0121 - 20330511-20330707,20332250-20332343
Length = 96
Score = 28.7 bits (61), Expect = 5.2
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Frame = +2
Query: 431 IHPSHKYTRR-SFMESFESQQHAYNSSFPCLALPFLSQPLSSLVACSETYLMKSSRARPP 607
+H ++TRR F+++ A +S +ALP+ + L++ + S T R++PP
Sbjct: 10 LHLFGQHTRRMEFIDNEMPSGTAMPTSVEGVALPWPHESLTTPIDTSNTASSLEPRSKPP 69
Query: 608 LYL*GFL-ELSLGFQKIVGKPETS 676
Y G L + +G VG +S
Sbjct: 70 NYAMGVLNDGCIGVHDSVGVASSS 93
>10_07_0030 - 12044953-12045524,12045567-12045876
Length = 293
Score = 28.7 bits (61), Expect = 5.2
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 692 GPNHNSTFPASPQSSGSLRTAPRNLRDIME 603
G HN P PQ+SG T+ + +++I++
Sbjct: 106 GAKHNMAVPYHPQTSGRAETSNKQIKNILQ 135
>11_04_0010 - 12139533-12139571,12140893-12141230,12141235-12141721
Length = 287
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 704 LQMTGPNHNSTFPASPQSSGSLRTAPRNLRDIME 603
LQ G HN P PQ+SG + + +++I++
Sbjct: 91 LQELGAQHNIAAPYHPQTSGQAEMSNKQIKNILQ 124
>04_02_0034 -
8999618-9000358,9001439-9001618,9001666-9003621,
9004647-9004786,9004871-9005282,9006399-9006638
Length = 1222
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -1
Query: 704 LQMTGPNHNSTFPASPQSSGSLRTAPRNLRDIME 603
L+ G HN P PQ+SG T+ + +++I++
Sbjct: 146 LRDMGAKHNVATPYYPQTSGQAETSNKQIKNILQ 179
>03_02_0811 + 11437654-11438958
Length = 434
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 442 TQIHTQIFHGKF*ITTARLQLFLSLF-GVTLSVPALKFACGLFRN 573
T ++T + K +TT L++ F G SVP + F CGLF N
Sbjct: 160 TCVYTYSYGDKS-VTTGFLEVDKFTFVGAGASVPGVAFGCGLFNN 203
>03_02_0809 + 11419318-11420493
Length = 391
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 442 TQIHTQIFHGKF*ITTARLQLFLSLF-GVTLSVPALKFACGLFRN 573
T ++T + K +TT L++ F G SVP + F CGLF N
Sbjct: 113 TCVYTYSYGDKS-VTTGFLEVDKFTFVGAGASVPGVAFGCGLFNN 156
>01_05_0573 + 23359968-23361044,23361112-23361255,23361458-23361841
Length = 534
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Frame = +1
Query: 256 KVILDLLSVNMMVNECNITIARGTTM----SLYPKNAFHICF--PLDRY 384
K++ L SV M +CNIT+ GT S ++AF P DRY
Sbjct: 485 KLVKPLSSVKMASGDCNITVVEGTVHDEEDSCCLRDAFDFSIDDPFDRY 533
>12_01_1102 + 11622839-11623341,11623441-11623750
Length = 270
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -1
Query: 704 LQMTGPNHNSTFPASPQSSGSLRTAPRNLRDIMEDVL 594
LQ HN P PQ+SG T+ + +++I++ +
Sbjct: 117 LQEMRAKHNVATPYHPQTSGQAETSNKQIKNILQKTI 153
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,568,775
Number of Sequences: 37544
Number of extensions: 406299
Number of successful extensions: 1018
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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