Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12a04f
         (546 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    22   4.0  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   5.3  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   9.3  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   9.3  

>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 104 AKIKRIIATFVIV*VYL 54
           AK+K I  TFVIV V++
Sbjct: 245 AKVKTIKITFVIVSVFI 261


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 288 RKKNDETANQRKREDINHGFQQVKT 362
           R+ N     +R+R  IN+   ++KT
Sbjct: 35  RRSNKPIMEKRRRARINNSLNELKT 59


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 427 ILPTYFMTNESFIILCKFY*Y 489
           +L TY+      I+LC +Y Y
Sbjct: 97  LLCTYYFYYAFIILLCVYYFY 117


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 137 GTAAPSNPYTAAKIKR 90
           GT++PSN +T   I+R
Sbjct: 261 GTSSPSNRFTRHLIQR 276


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,410
Number of Sequences: 336
Number of extensions: 2527
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13411456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)