Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12a04f
(546 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 27 1.4
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 27 2.4
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos... 26 3.2
SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2 ... 26 3.2
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p... 26 4.2
SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces po... 26 4.2
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa... 25 7.3
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 25 7.3
SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch... 25 7.3
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 450 SHKIRRKDL*HYYANFLMNSLFFLNKINLLFSLVEIH 340
+H + K L +YY N S LNK + +LV++H
Sbjct: 857 THAVTEKVLYYYYGNECNESYIILNKWDQQPNLVDVH 893
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 26.6 bits (56), Expect = 2.4
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = -2
Query: 347 KSMVDIFPFSLISSFVIFFPALSTIVEMAAPFMLGPRPTFE--AMSWMFDMPCIKLAGEK 174
K + D+F LI+S I AL I+E+ + E M+ F + CI+ K
Sbjct: 229 KQVFDVFNTFLIASGAIISKALGNIIEIITGIANSKQVDDEIRCMALSFIISCIRFKSRK 288
Query: 173 LLA 165
L A
Sbjct: 289 LQA 291
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 82 AIILLILAAVYGLEGAAVPNDPNIFPINAN 171
A +L I AV G + N PNIFPI N
Sbjct: 361 AALLSIGVAVEGSSESVAGNLPNIFPIIIN 390
>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 26.2 bits (55), Expect = 3.2
Identities = 19/66 (28%), Positives = 27/66 (40%)
Frame = +3
Query: 171 QFFARKLNARHVKHPGHGFKSWSWT*HERCSHFHDCR*RRKKNDETANQRKREDINHGFQ 350
QF RKL H KH HG S S + + HD + K+D+ D+ F+
Sbjct: 213 QFIFRKLGLHHGKHGHHG-HSGSLSLKSLVPNHHD---KHDKHDKHEKHHSSLDLRRFFK 268
Query: 351 QVKTAD 368
+ D
Sbjct: 269 SHQKTD 274
>SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 218
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 394 IHQEICIIMLKILPTYFMTNESFIILCKFY 483
+ E+C L + T+ +N SFI CKFY
Sbjct: 148 LSMELCASALHVALTFLKSNGSFI--CKFY 175
>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 226
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/36 (38%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
Frame = -2
Query: 368 ICCFHLLKSMVDIFPFSLI-SSFV--IFFPALSTIV 270
+ CFHL+ + + +FP+++I +SFV F LS+I+
Sbjct: 44 LLCFHLVPNALFLFPWTIITTSFVDANVFTLLSSIL 79
>SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -2
Query: 251 MLGPRPTFEAMSWMFDMPCIKLAGEKLLAFIGNMFGSLGTAAPSN 117
+LGP ++A P IK K++ F ++ GS+G PS+
Sbjct: 115 VLGPIHVYQAF-----YPLIKKGRSKIIVFTSSLAGSMGAFFPSS 154
>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 25.0 bits (52), Expect = 7.3
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 76 KVAIILLILAAVYGLEGAAVPNDPNIFPINANSFSPASLMQGMSNIQDMAS 228
++AI ++ + GL P+DPN+ + S SP L +NI+ + S
Sbjct: 307 RIAIFYVVSLILIGL--LISPDDPNLMGNGSTSVSPFVLAIKEANIKGLPS 355
>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 313 LAVSSFFFLRYLQSWKWLHRSC*VQDQLLK 224
L +F + QSWKW H C V +++L+
Sbjct: 49 LRFGTFVDVGKFQSWKWRHWGC-VTERVLR 77
>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
Mud1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 127 AAVPNDPNIFPINANSFSPASLMQGMSNIQDM 222
AAV NDPN F S + + L+Q S+ M
Sbjct: 31 AAVLNDPNAFATTWQSINASQLLQIPSSTYSM 62
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,140,568
Number of Sequences: 5004
Number of extensions: 41405
Number of successful extensions: 118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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