Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12a04f
         (546 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0671 - 5702051-5702159,5702493-5703216,5703910-5704476,570...    31   0.60 
04_04_0338 + 24509698-24510042,24510373-24510490,24510539-245106...    29   3.2  
03_01_0658 + 4818401-4818540,4818605-4819201,4819694-4819949,482...    28   5.6  
06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050     27   7.4  
07_01_0026 + 190568-190829,192475-194534,194620-195168                 27   9.8  
01_05_0773 + 25062364-25062894,25063000-25063244,25063365-250637...    27   9.8  

>12_01_0671 - 5702051-5702159,5702493-5703216,5703910-5704476,
            5704654-5704873,5705303-5707207
          Length = 1174

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +3

Query: 327  EDINHGFQQVKTAD*FYLKKIANSSRNLHNNVKDPSYVFYD 449
            ED++HG + +K  D + ++K  N  RN++ NV  PS +  D
Sbjct: 1088 EDLSHGIKAMKIVDSYGVQKDQN-GRNVNRNVVSPSKLHSD 1127


>04_04_0338 +
           24509698-24510042,24510373-24510490,24510539-24510642,
           24510823-24511491
          Length = 411

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 221 MSWMFDMPCIKLAGEKLLAFIGNMFGSLGTAA 126
           ++W     C+  A   LL F G+M G +G A+
Sbjct: 315 LAWRTAFVCVTTAASTLLPFFGSMVGLIGAAS 346


>03_01_0658 +
           4818401-4818540,4818605-4819201,4819694-4819949,
           4820038-4820723,4821009-4821147,4821378-4821514,
           4821805-4822077,4822175-4822382,4822660-4822731,
           4823230-4823460,4824269-4824532,4825127-4825268,
           4825355-4825467
          Length = 1085

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 7/28 (25%), Positives = 21/28 (75%)
 Frame = -3

Query: 133 RPHLLTRTRQPKSKE*LQPSSLYKFICV 50
           RP+   ++++P++ +   PS+++K++C+
Sbjct: 3   RPNTRNKSKRPRADDCESPSAVFKYVCI 30


>06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050
          Length = 478

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 18/81 (22%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
 Frame = +1

Query: 109 VYGLEGAAVPNDPNIFPINANSFSPASLMQGMSNIQDMASKVGLGPNMNGAAISTIVD-- 282
           V  L+   +   P+IF + AN+++   L +   N+  +    G+ PN+    ++ +++  
Sbjct: 354 VAALKAENLQLSPSIFCVLANAYAQQGLCEQTVNVLQLMEAEGIEPNL--VMLNLLINAF 411

Query: 283 -SAGKKMTKLLISENGKISTM 342
            +AG+ +  L + ++ K S M
Sbjct: 412 GTAGRHLEALAVLQHIKDSGM 432


>07_01_0026 + 190568-190829,192475-194534,194620-195168
          Length = 956

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 22/98 (22%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
 Frame = +1

Query: 61  TYTMTKVAIILLILAAVYGLEGAAVPNDPNIFPINANSFSPASLMQGM----SNIQDMAS 228
           T ++T +  +  +   + GL+G    +DP  F +   SF+ + LMQ +    S ++++A 
Sbjct: 671 TASLTSILTVQQLSTGIQGLDGLIASSDPIGFQV--GSFAKSYLMQELGVPESRLRELAI 728

Query: 229 KVGLGPNMNGAAISTIVDSAGKKMTKLLISENGKISTM 342
                 ++    ++ IVD       +L +S N +  T+
Sbjct: 729 -TDYASSLQTGVVAAIVDEL--PYVELFLSTNCQFRTV 763


>01_05_0773 +
           25062364-25062894,25063000-25063244,25063365-25063749,
           25063857-25064282
          Length = 528

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = +1

Query: 61  TYTMTKVAIILLILAAVYGLEGAAVPNDPNIFPINANSFSPASLMQGMS 207
           TY   ++  +      +  L    + +DPNI+  +A+ F P   ++G+S
Sbjct: 409 TYKQMEIGGVTYPAGVIVELPVLLIHHDPNIWGSDAHEFKPDRFVEGIS 457


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,781,897
Number of Sequences: 37544
Number of extensions: 236754
Number of successful extensions: 527
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)