Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12a04f
         (546 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50960| Best HMM Match : Pkinase (HMM E-Value=0)                     31   0.61 
SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)                    30   1.1  
SB_43487| Best HMM Match : K-box (HMM E-Value=0.79)                    30   1.4  
SB_41561| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.28)           28   4.3  
SB_19645| Best HMM Match : Smr (HMM E-Value=8.2)                       28   4.3  
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_57587| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_34188| Best HMM Match : Astacin (HMM E-Value=0)                     27   7.6  
SB_19101| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_50960| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 632

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -3

Query: 307 VSSFFFLRYLQSWKWLHR 254
           + S++FLRYLQ WKWL R
Sbjct: 61  LDSYYFLRYLQ-WKWLER 77


>SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)
          Length = 1771

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +1

Query: 70  MTKVAIILLILAAVYGLEGAAVPNDPNIFPINANSFSPASLMQGMS--NIQDMASKVGL 240
           +T +  + L  A+V   +GA V N PN+  +N  SF+   +   M+  + +D+  K GL
Sbjct: 219 LTSLESVALATASVLPTDGAVVKNTPNVL-LNMQSFNKEHMSGKMAYPSDEDLNEKAGL 276


>SB_43487| Best HMM Match : K-box (HMM E-Value=0.79)
          Length = 243

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +3

Query: 318 RKREDINHGFQQVKTAD*FYLKKIANSSRNLHNNVKD 428
           + +ED  +G++QV   D  Y  K  N++ N++NN ++
Sbjct: 183 KTKEDKVYGYEQVSQRDEDYTSKDINNNNNINNNRRE 219


>SB_41561| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.28)
          Length = 1643

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +1

Query: 139  NDPNIFPINANSFSPA-SLMQGMSNIQDMASKVGLGPNMNGAAISTIVDSAGKKMTKLLI 315
            +D  + P   +S  PA SL    S+  +M + +    N +    STI+     ++  +  
Sbjct: 1490 SDDKLDPTTPSSVLPALSLADQFSHTPNMETILSQAKNTS----STIISGPSTEVVSIAT 1545

Query: 316  SENGKISTMD 345
            SEN ++STM+
Sbjct: 1546 SENNQLSTME 1555


>SB_19645| Best HMM Match : Smr (HMM E-Value=8.2)
          Length = 346

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/48 (25%), Positives = 27/48 (56%)
 Frame = +3

Query: 330 DINHGFQQVKTAD*FYLKKIANSSRNLHNNVKDPSYVFYD*RKFYNIM 473
           D++ G   +  ++   L K++ S ++L+ N+KDP   F +  K  +++
Sbjct: 228 DLSLGSDSIPASEGASLMKLSTSLQSLNTNIKDPRAAFLNRTKIKDLL 275


>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4475

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 193  MQGMSNIQDMASKVGLGPNMNGAAISTIVDSAGKKMT 303
            +Q ++N + +   +G+GPN+N A + T + S     T
Sbjct: 1277 VQQLTNAKAVVYTIGVGPNVNRAQLETTITSPNNLFT 1313


>SB_57587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 199

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 17/74 (22%), Positives = 28/74 (37%)
 Frame = +1

Query: 202 MSNIQDMASKVGLGPNMNGAAISTIVDSAGKKMTKLLISENGKISTMDXXXXXXXXXXXX 381
           M   Q    ++G   N   A    +   AG +    ++ E GK S +D            
Sbjct: 122 MDLTQKYTYRLGFSYNTTSALYLRLEGEAGSEKIVSVVEEWGKKSLLDGQSAPFTGSMAT 181

Query: 382 XX*RIHQEICIIML 423
              +IH ++C +ML
Sbjct: 182 MFRKIHGKVCNMML 195


>SB_34188| Best HMM Match : Astacin (HMM E-Value=0)
          Length = 844

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = +1

Query: 85  IILLILAAVYGLEGAAVPNDPNIFPINANSFSPASLMQ 198
           II LILAA+YG+EG  +P  P   P       P  L+Q
Sbjct: 7   IIALILAALYGVEG--IPKKPKERPRKGRKI-PDRLLQ 41


>SB_19101| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 134

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 192 NARHVKHPGHGFKSWSWT*HERCSHFHDCR*RRKKNDETANQRKREDINH 341
           +AR VK+   G K  +       +H H CR RR ++ E  + R  + + H
Sbjct: 46  HARQVKYGREGAKDVNAHVQLEKAHGHACRGRRHQHPEGHSNRAYDQVRH 95


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,219,337
Number of Sequences: 59808
Number of extensions: 277701
Number of successful extensions: 728
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)