Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12a04f
         (546 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75540-6|CAN86598.1|  584|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z75540-3|CAD01084.1|  581|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z75540-2|CAA99848.1|  582|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z49067-3|CAA88852.3|  591|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z34799-8|CAA84319.3|  591|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z27079-2|CAA81589.1|  205|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U97191-1|AAB52432.1|  805|Caenorhabditis elegans Nuclear pore co...    27   8.8  
AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical ...    27   8.8  

>Z75540-6|CAN86598.1|  584|Caenorhabditis elegans Hypothetical
           protein F37D6.2c protein.
          Length = 584

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = +3

Query: 222 GFKSWSWT*HERCSHFHDCR*RRKKNDETANQRKREDINHG 344
           GFKSW+   +   SH+H C  RR  ND    +RKRE +  G
Sbjct: 469 GFKSWNG--NRTASHYHKC--RRSIND---IERKREIVRLG 502


>Z75540-3|CAD01084.1|  581|Caenorhabditis elegans Hypothetical
           protein F37D6.2b protein.
          Length = 581

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = +3

Query: 222 GFKSWSWT*HERCSHFHDCR*RRKKNDETANQRKREDINHG 344
           GFKSW+   +   SH+H C  RR  ND    +RKRE +  G
Sbjct: 466 GFKSWNG--NRTASHYHKC--RRSIND---IERKREIVRLG 499


>Z75540-2|CAA99848.1|  582|Caenorhabditis elegans Hypothetical
           protein F37D6.2a protein.
          Length = 582

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = +3

Query: 222 GFKSWSWT*HERCSHFHDCR*RRKKNDETANQRKREDINHG 344
           GFKSW+   +   SH+H C  RR  ND    +RKRE +  G
Sbjct: 467 GFKSWNG--NRTASHYHKC--RRSIND---IERKREIVRLG 500


>Z49067-3|CAA88852.3|  591|Caenorhabditis elegans Hypothetical
           protein C44F1.1 protein.
          Length = 591

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -3

Query: 274 SWKWLHRSC-*VQDQLLKPCP 215
           +W+WLHR+C  +QD   K CP
Sbjct: 300 TWQWLHRACEMIQDVGHKLCP 320


>Z34799-8|CAA84319.3|  591|Caenorhabditis elegans Hypothetical
           protein C44F1.1 protein.
          Length = 591

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -3

Query: 274 SWKWLHRSC-*VQDQLLKPCP 215
           +W+WLHR+C  +QD   K CP
Sbjct: 300 TWQWLHRACEMIQDVGHKLCP 320


>Z27079-2|CAA81589.1|  205|Caenorhabditis elegans Hypothetical
           protein T05G5.2 protein.
          Length = 205

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 320 SLISSFVIFFPALSTIVEMAAPFMLGPRPTFEAMSWMFDMP 198
           SL+     F  +L+  V M  P +  P+PTF  M  + D P
Sbjct: 127 SLVDYRSTFASSLAPPVPMQMPSVFSPQPTFPYMKSLLDYP 167


>U97191-1|AAB52432.1|  805|Caenorhabditis elegans Nuclear pore
           complex protein protein11 protein.
          Length = 805

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +1

Query: 103 AAVYGLEGAAVPN--DPNIFPINANSFSPASLMQGMS 207
           A ++G  GAA P     +IF  +ANS +PA++  G S
Sbjct: 85  AGIFGNSGAAAPAPASTSIFGSSANSAAPATVTFGAS 121


>AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical
            protein T05C3.2 protein.
          Length = 1733

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 302  RNC*SAKTGRYQPWISTSENSRLILFKKNSEF 397
            RNC S+++    PWI        +L+++N EF
Sbjct: 1243 RNCGSSQSQSQNPWIVGVMIDSFLLYRENCEF 1274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,616,733
Number of Sequences: 27780
Number of extensions: 226946
Number of successful extensions: 615
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)