Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12a02r
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    27   2.1  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    26   6.5  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    26   6.5  
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc...    25   8.6  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   8.6  
SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi...    25   8.6  

>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 273 TSLLCSAESTTGSESRPTEKNRRKTQWVLSLSTY 172
           T  +CSA STT + +  T+K RR++  +   S Y
Sbjct: 259 TDPVCSASSTTVNSAVSTKKRRRESSTISPESAY 292


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = -1

Query: 166 PMLGAPKSIENRTVSCSSLTLFILPSM----CSDSNGYIL 59
           P   +P+S  + T+SCS LTL ++        SDSN Y+L
Sbjct: 338 PFTPSPRS--SHTLSCSGLTLVLIGGKQGKGASDSNVYML 375


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 248 QPPDRNLDPPKKTDEKLSGFCLLV 177
           +P +++  PPKK   KL  FC ++
Sbjct: 498 KPSEKSEKPPKKKGSKLEKFCCIL 521


>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 517

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -1

Query: 163 MLGAPKSIENRTVSCSSLTLF-ILPSMCSDSN-GYILLSIFVIFTI 32
           ML  P ++  R  + +  T+  + P+  S+++  Y+LLS  V+FT+
Sbjct: 1   MLNEPNALLRRDANSTIATVTELFPNEYSNADIAYVLLSTVVVFTV 46


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +1

Query: 466 HLSHHTESLSRCKKEMPTD-PAINIAHRHIERD 561
           H     ESLS C K +PT  PA  +  R+  RD
Sbjct: 578 HTYDFPESLSHCVKRLPTPIPAEELQKRYNLRD 610


>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 615

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 57  NNIYPFESLHILGKIKRVRDEHDTVLFSML 146
           NN+ PFE    LG +  V  E + +L S +
Sbjct: 327 NNLMPFEDASFLGFVNGVGREMEKILISSI 356


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,004,437
Number of Sequences: 5004
Number of extensions: 61165
Number of successful extensions: 166
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)