Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12a02r
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0163 - 6059516-6059552,6059630-6059708,6059798-6059922,606...    28   6.8  
10_02_0131 + 5595135-5595184,5596121-5596289,5596376-5596655,559...    28   6.8  
11_03_0067 - 9535565-9536157,9536446-9536757,9536948-9537212,953...    28   9.0  

>10_02_0163 -
           6059516-6059552,6059630-6059708,6059798-6059922,
           6060022-6060118,6060201-6060390
          Length = 175

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +1

Query: 364 SVLFLAVISKLINCSKVSLCNTIFKPCRSV*KFKHLSHHTESLSRCKKEMP 516
           S+ F+    K I    + + +  FKP   V K K L+ H    +RC  E P
Sbjct: 74  SIGFVEGYKKRIPYRNILIIDGSFKPVMLVIKDKMLTDHLTKWARCSNEQP 124


>10_02_0131 +
           5595135-5595184,5596121-5596289,5596376-5596655,
           5596738-5596834,5596931-5597055,5597145-5597223,
           5597301-5597337
          Length = 278

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +1

Query: 364 SVLFLAVISKLINCSKVSLCNTIFKPCRSV*KFKHLSHHTESLSRCKKEMP 516
           S+ F+    K I    + + +  FKP   V K K L+ H    +RC  E P
Sbjct: 177 SIGFVEGYKKRIPYRNILIIDGSFKPVMLVIKDKMLTDHLTKWARCSNEQP 227


>11_03_0067 -
           9535565-9536157,9536446-9536757,9536948-9537212,
           9537810-9538048,9538400-9538568,9539216-9539410,
           9539649-9539766,9542140-9542315
          Length = 688

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -2

Query: 543 MRNVYRRVCR-HLLFAPRKRFGVMRQMFEFLN 451
           ++N   R+CR H+L   +K+ GV+ +MF+  N
Sbjct: 233 LKNTIHRLCRWHVLKKYKKQLGVLYEMFKHRN 264


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,483,976
Number of Sequences: 37544
Number of extensions: 371025
Number of successful extensions: 717
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)