Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12a02r
         (745 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38386| Best HMM Match : PALP (HMM E-Value=4.1e-10)                  30   2.3  
SB_6620| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.0  
SB_53447| Best HMM Match : DUF924 (HMM E-Value=3.6e-17)                28   7.0  
SB_39437| Best HMM Match : TLP-20 (HMM E-Value=1.5)                    28   9.2  
SB_19076| Best HMM Match : HECT (HMM E-Value=0)                        28   9.2  

>SB_38386| Best HMM Match : PALP (HMM E-Value=4.1e-10)
          Length = 736

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 30  NIVNITKIDNNIYPFESLHILGKIKRVRD 116
           NI N+T++DNN++  E  H  GK K  +D
Sbjct: 398 NICNLTRLDNNLHILELFH--GKTKAFKD 424


>SB_6620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1375

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +1

Query: 262 QEGSVGKSSQVKPHELTHQSVGIAS*PTKRLRRKSVLFLAVISKLINCSKVS 417
           ++ + G++  V  H   H++V        R RRK  LFL + S+ +  S VS
Sbjct: 396 EDPTAGRNDHVSKHVTVHRTVSERMREYDRKRRKRRLFLFISSRSVPVSPVS 447


>SB_53447| Best HMM Match : DUF924 (HMM E-Value=3.6e-17)
          Length = 585

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 636 LERLTKVTKVMCDRDSVLRSRDNSIVSFYMTMRNV 532
           LE + K  + + +  S L SRD  +V  Y+T RN+
Sbjct: 284 LETIAKFVREVAEALSFLHSRDPPVVHRYLTPRNI 318


>SB_39437| Best HMM Match : TLP-20 (HMM E-Value=1.5)
          Length = 424

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 259 AQEGSVGKSSQVKPHELTHQSVGI 330
           A+ G+ G S ++K H +  QSVG+
Sbjct: 82  AEIGNTGSSGEIKEHSVKEQSVGV 105


>SB_19076| Best HMM Match : HECT (HMM E-Value=0)
          Length = 2018

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 275 TLPSCAQLNQPPDRNLDPPK 216
           T+ +CA  N  PD +LDPP+
Sbjct: 652 TIGTCATTNPLPDHDLDPPR 671


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,141,184
Number of Sequences: 59808
Number of extensions: 458138
Number of successful extensions: 1229
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)