Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12a02r
         (745 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical p...    30   2.0  
Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z50029-8|CAA90342.2|  668|Caenorhabditis elegans Hypothetical pr...    29   4.6  
X59156-9|CAB56747.1|  108|Caenorhabditis elegans transposase pro...    28   6.1  

>Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical
           protein C53B4.4e protein.
          Length = 1544

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/69 (28%), Positives = 34/69 (49%)
 Frame = -2

Query: 585 LRSRDNSIVSFYMTMRNVYRRVCRHLLFAPRKRFGVMRQMFEFLNTAAWLKYGITKAHFT 406
           +R R+ S+ + +MT+ ++  RV    +   +  F V    +E LN + +LKY  T  HF 
Sbjct: 253 IRIRELSLGTKFMTINSI--RVESVEMADDKNTFDVSFFPYEQLNLSEFLKYAQTSKHFF 310

Query: 405 AIY*FTYYC 379
            +     YC
Sbjct: 311 ILSPVNVYC 319


>Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical
           protein C53B4.4b protein.
          Length = 1586

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/69 (28%), Positives = 34/69 (49%)
 Frame = -2

Query: 585 LRSRDNSIVSFYMTMRNVYRRVCRHLLFAPRKRFGVMRQMFEFLNTAAWLKYGITKAHFT 406
           +R R+ S+ + +MT+ ++  RV    +   +  F V    +E LN + +LKY  T  HF 
Sbjct: 253 IRIRELSLGTKFMTINSI--RVESVEMADDKNTFDVSFFPYEQLNLSEFLKYAQTSKHFF 310

Query: 405 AIY*FTYYC 379
            +     YC
Sbjct: 311 ILSPVNVYC 319


>Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical
           protein C53B4.4a protein.
          Length = 1584

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/69 (28%), Positives = 34/69 (49%)
 Frame = -2

Query: 585 LRSRDNSIVSFYMTMRNVYRRVCRHLLFAPRKRFGVMRQMFEFLNTAAWLKYGITKAHFT 406
           +R R+ S+ + +MT+ ++  RV    +   +  F V    +E LN + +LKY  T  HF 
Sbjct: 253 IRIRELSLGTKFMTINSI--RVESVEMADDKNTFDVSFFPYEQLNLSEFLKYAQTSKHFF 310

Query: 405 AIY*FTYYC 379
            +     YC
Sbjct: 311 ILSPVNVYC 319


>Z50029-8|CAA90342.2|  668|Caenorhabditis elegans Hypothetical
           protein ZC504.3 protein.
          Length = 668

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 353 NRLVG*EAIPTDWWVSS*-GLTWDDLPTLPSCAQLNQPPDRN 231
           NRL   EA+  DW+      +  +DLP  P+ ++LN  P  N
Sbjct: 587 NRLTASEALQHDWFSEHPKAVPPEDLPVYPAKSELNAAPPEN 628


>X59156-9|CAB56747.1|  108|Caenorhabditis elegans transposase
           protein.
          Length = 108

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 136 NRTVSCSSLTLFILPSMCSDSNG 68
           NR+V C ++ L I  S+CSD  G
Sbjct: 59  NRSVWCKTVNLIIFTSICSDCQG 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,530,459
Number of Sequences: 27780
Number of extensions: 342352
Number of successful extensions: 872
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)