Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12a02f
         (594 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q57X89 Cluster: Pumilio/PUF RNA binding protein 5, puta...    35   1.7  
UniRef50_Q6UBE3 Cluster: Pumilio protein 5; n=3; Trypanosoma cru...    33   6.7  
UniRef50_A0CCJ4 Cluster: Chromosome undetermined scaffold_167, w...    33   6.7  

>UniRef50_Q57X89 Cluster: Pumilio/PUF RNA binding protein 5,
           putative; n=1; Trypanosoma brucei|Rep: Pumilio/PUF RNA
           binding protein 5, putative - Trypanosoma brucei
          Length = 430

 Score = 34.7 bits (76), Expect = 1.7
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +3

Query: 258 PHIKNFVLSRIMFQIVPISTRNCKTKIIIKCILQHL 365
           PH + F++SR++   +P  T NC    +++C+L H+
Sbjct: 278 PHQQRFIISRLL-PALPALTMNCYGNYVVQCVLHHM 312


>UniRef50_Q6UBE3 Cluster: Pumilio protein 5; n=3; Trypanosoma
           cruzi|Rep: Pumilio protein 5 - Trypanosoma cruzi
          Length = 418

 Score = 32.7 bits (71), Expect = 6.7
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +3

Query: 258 PHIKNFVLSRIMFQIVPISTRNCKTKIIIKCILQHL 365
           PH +  V+S ++  ++P  T NC    +++C+LQH+
Sbjct: 252 PHQRRSVISMLL-PVLPSLTMNCYGNYVVQCLLQHM 286


>UniRef50_A0CCJ4 Cluster: Chromosome undetermined scaffold_167,
           whole genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_167,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 403

 Score = 32.7 bits (71), Expect = 6.7
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +3

Query: 393 KAYYTSLVEYANAEVVMRTLCIIRISLHAPDYQAQLSNQGS*TLQTPQHDVQVYPAVR 566
           +A+YT LV +  AEV   T  +  ++ H   YQ QL+ +     +T +   Q+   +R
Sbjct: 134 QAFYTDLVTFYTAEVAQHTEDLRSLNNHLESYQQQLTQRQEELDRTQKQKAQLEETIR 191


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 528,049,653
Number of Sequences: 1657284
Number of extensions: 9787505
Number of successful extensions: 24098
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24077
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41488046300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)