Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12a02f
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po...    28   0.89 
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    28   1.2  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    27   2.7  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    25   6.3  
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.3  

>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +2

Query: 281 ESNYVPNSSNQHTELQN*NNNKMYLTTS 364
           ESN   NS N+HTE+Q  +N+   LT S
Sbjct: 257 ESNSALNSQNEHTEVQKKSNSIDNLTPS 284


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 287 STQNKVFNMWGYFFTFLVFFSI 222
           S  N+ FN+W +   F+VFF++
Sbjct: 203 SWHNETFNIWTHLSAFIVFFAV 224


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -2

Query: 344 YYYFSFAIPCADWNYLEHNSTQNKVFN 264
           Y Y  FAI  A    LEH ST N   N
Sbjct: 452 YSYLGFAIHSAHTLGLEHGSTDNSTLN 478


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 366 LNKSFNVCYKAYYTSLVEYANAEVVMRTLCIIRISLHAPDYQAQLSNQG 512
           + +   V Y AYY  L +YAN   + R L     S++A D  +  S +G
Sbjct: 309 IEEELEVLYDAYYEELEQYAN---IQRNLANTE-SVNASDEGSDKSQKG 353


>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 127

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 38  MYSLVYVRV*IDYLIYVCYFLIIVSGFKVAQVFIFIH 148
           M S  +VR    YLIY CY    ++ F+V    IF++
Sbjct: 40  MSSKSFVRGVKRYLIYFCYCANFIALFRVIFGTIFVY 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,345,928
Number of Sequences: 5004
Number of extensions: 46142
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)