Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12a02f
         (594 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110500-20|CAI79282.1|  110|Caenorhabditis elegans Hypothetical...    30   1.4  
Z98851-5|CAB11541.1|  596|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z98851-4|CAB11542.1|  607|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U97196-12|AAB52456.2|  564|Caenorhabditis elegans Hypothetical p...    28   5.8  
AC024804-6|AAF60746.1|  162|Caenorhabditis elegans Hypothetical ...    28   5.8  

>AL110500-20|CAI79282.1|  110|Caenorhabditis elegans Hypothetical
           protein Y87G2A.19 protein.
          Length = 110

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 17  LTCVRC*MYSLVYVRV*IDYLIYVCYFLIIVSGFKVAQVF 136
           L C RC ++    +R    +  YV +F+I++ GF +  +F
Sbjct: 36  LDCPRCKVHGETELRFVNGFFTYVSFFIILIFGFAILPLF 75


>Z98851-5|CAB11541.1|  596|Caenorhabditis elegans Hypothetical
           protein H12I19.5b protein.
          Length = 596

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 379 KLLFKRCCKIHFIIILVLQFRVLIGTIWNIIRLKTKFLI 263
           K + K CC +  I++L+   ++  GTI  +  + T  LI
Sbjct: 236 KKVMKNCCLVLMIVVLIYPIKLPAGTIRTLFTIVTGLLI 274


>Z98851-4|CAB11542.1|  607|Caenorhabditis elegans Hypothetical
           protein H12I19.5a protein.
          Length = 607

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 379 KLLFKRCCKIHFIIILVLQFRVLIGTIWNIIRLKTKFLI 263
           K + K CC +  I++L+   ++  GTI  +  + T  LI
Sbjct: 236 KKVMKNCCLVLMIVVLIYPIKLPAGTIRTLFTIVTGLLI 274


>U97196-12|AAB52456.2|  564|Caenorhabditis elegans Hypothetical
           protein B0207.1 protein.
          Length = 564

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 345 KCILQHLLNKSFNVCYKAYYTSLVEYANAEVV 440
           +C+L++L+ K +NV    Y   L EY  AE +
Sbjct: 516 RCVLEYLVQKKYNVNRDDYTKFLKEYKVAEKI 547


>AC024804-6|AAF60746.1|  162|Caenorhabditis elegans Hypothetical
           protein Y51H7BR.3 protein.
          Length = 162

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 370 FKRCCKIHFIIILVLQFRVLIGTIWNIIRLKTKF 269
           FK CC I   + L++   +L+GT+  ++    KF
Sbjct: 12  FKICCLIFLTLQLLISLFILLGTVPALMNFDVKF 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,969,562
Number of Sequences: 27780
Number of extensions: 258609
Number of successful extensions: 645
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)