Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12a01f
(531 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646... 70 1e-12
01_06_1732 - 39531577-39531726,39531809-39531925,39532175-395323... 67 7e-12
11_04_0307 + 16185405-16185713,16185847-16185942,16186626-161867... 56 2e-08
08_02_1264 + 25706009-25706148,25706613-25706716,25707108-257072... 48 5e-06
06_03_1011 - 26882011-26882157,26882576-26884248,26884607-268847... 42 4e-04
08_01_0525 + 4564885-4565221,4565337-4565476,4565582-4565677,456... 28 5.4
01_01_1062 + 8381281-8381490,8382353-8382449,8382546-8382637,838... 28 5.4
07_03_1716 + 28955395-28955775,28955858-28956091 27 9.4
03_05_0168 - 21466431-21466445,21467053-21467160,21467222-214673... 27 9.4
>04_03_0660 +
18463011-18463322,18463424-18463516,18464500-18464607,
18464892-18465044,18465256-18465354,18465443-18465571,
18465987-18466166,18466208-18466246,18466247-18466363,
18466445-18466609
Length = 464
Score = 70.1 bits (164), Expect = 1e-12
Identities = 46/147 (31%), Positives = 74/147 (50%), Gaps = 31/147 (21%)
Frame = +2
Query: 155 IKAFEEVLDQDVIDMQQLQKLAFNGIPDDKGLRSLVWK-ILLHYLPQEKNARETTLIKKR 331
+ F L + V+D+ +L++LA G+PD G+R +VWK +LL YLP + L KKR
Sbjct: 98 VPEFTVALGRKVVDLAELRRLACQGVPDAAGVRPVVWKQLLLGYLPTDHALWAYELEKKR 157
Query: 332 QLYKQF--------------IEEIIVSPGGP----------------TDHPLNMSPDSSW 421
Y F +EE+ +S G +HPL++ S W
Sbjct: 158 SQYSAFKDELLVNPSEVTRRMEEMTISKGNRHNSEGTGVLPRAEIVHDEHPLSLGKTSVW 217
Query: 422 STYFKDNEVLLQIDKDVRRLCPDISFF 502
+ +F+++E + QID+DV+R P++ FF
Sbjct: 218 NQFFQESETIEQIDRDVKRTHPEMQFF 244
>01_06_1732 -
39531577-39531726,39531809-39531925,39532175-39532354,
39532704-39532802,39533571-39533675,39534046-39534138,
39534243-39534326
Length = 275
Score = 67.3 bits (157), Expect = 7e-12
Identities = 42/115 (36%), Positives = 60/115 (52%)
Frame = +2
Query: 176 LDQDVIDMQQLQKLAFNGIPDDKGLRSLVWKILLHYLPQEKNARETTLIKKRQLYKQFIE 355
L + VID+ +L+ LA G+PD +R VWK+LL YLP ++ E L KKR Y F E
Sbjct: 29 LSKKVIDLDELRMLAAQGVPDGAAVRPTVWKLLLGYLPSDRALWEQELAKKRSQYAAFKE 88
Query: 356 EIIVSPGGPTDHPLNMSPDSSWSTYFKDNEVLLQIDKDVRRLCPDISFFQSATEF 520
E + +P Y +E++ QID+DV+R PD+ FF + F
Sbjct: 89 EFLSNP------------------Y---SEIIEQIDRDVKRTHPDMHFFCGDSSF 122
>11_04_0307 +
16185405-16185713,16185847-16185942,16186626-16186730,
16186938-16187090,16188395-16188478,16188566-16188694,
16188986-16189165,16189555-16189677,16189678-16189794,
16189889-16190053
Length = 486
Score = 55.6 bits (128), Expect = 2e-08
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Frame = +2
Query: 164 FEEVLDQDVIDMQQLQKLAFNGIPDD-KGLRSLVWKILLHYLPQEKNARETTLIKKRQLY 340
F+ L + V++M +L++LA G+PD +R LVWK+LL YLP E+ L KKR Y
Sbjct: 100 FKLALSKKVVNMGELRRLACLGVPDGGAAVRPLVWKLLLGYLPTERAFWPHELEKKRSQY 159
Query: 341 KQFIEEIIVSP 373
+ +E +++P
Sbjct: 160 SAYKDEFLLNP 170
Score = 54.4 bits (125), Expect = 5e-08
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Frame = +2
Query: 287 PQEKNAR--ETTLIKKRQLYKQFIEEIIVSPGGPTDHPLNMSPDSSWSTYFKDNEVLLQI 460
P EK R E+ L++K++L I + + +HPL+ S W+ YF+++E+L QI
Sbjct: 170 PSEKIRRFEESKLLRKKELNSDKIGLLPRAKVTNEEHPLSFGKSSLWNQYFQESEILEQI 229
Query: 461 DKDVRRLCPDISFFQS 508
D+DV+R P++ FF +
Sbjct: 230 DRDVKRTHPEMPFFSA 245
>08_02_1264 +
25706009-25706148,25706613-25706716,25707108-25707284,
25707775-25709708,25709781-25709867,25710058-25710091,
25710293-25710381,25710522-25710674
Length = 905
Score = 48.0 bits (109), Expect = 5e-06
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 15/104 (14%)
Frame = +2
Query: 248 LRSLVWKILLHYLPQEKNA----RETTLIKKRQLYKQFIEEIIVSPGGP----------T 385
LR + W++ L LP A R+ Y ++V P P
Sbjct: 14 LRGVRWRVDLGILPASPGASVDEHRRAAADSRRRYVSLRRRLLVDPHVPKEEGRSSNLIV 73
Query: 386 DHPLNMSPDSSWSTYFKDNEVLLQIDKDVRRLCP-DISFFQSAT 514
D+PL+ +PDSSW +F+ E+ +D+D+ RL P D S+FQ+ T
Sbjct: 74 DNPLSQNPDSSWGRFFRGAELEKTVDQDLSRLYPEDGSYFQTPT 117
>06_03_1011 -
26882011-26882157,26882576-26884248,26884607-26884783,
26885313-26885416,26885896-26886032
Length = 745
Score = 41.5 bits (93), Expect = 4e-04
Identities = 16/48 (33%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Frame = +2
Query: 368 SPGGPTDHPLNMSPDSSWSTYFKDNEVLLQIDKDVRRLCPDI-SFFQS 508
+P ++PL+ +P+S+W YF++ E+ +++D+ RL P++ +FFQ+
Sbjct: 67 APDLAVENPLSQNPESTWGQYFRNAELEKMLNQDLSRLYPELGNFFQT 114
>08_01_0525 +
4564885-4565221,4565337-4565476,4565582-4565677,
4566079-4566146,4566542-4566643,4567492-4567630,
4567758-4567898,4568241-4568297,4568400-4568459,
4568866-4568973,4569834-4569994,4570453-4570531,
4571357-4571490,4571846-4571951,4572244-4572432,
4572595-4572822,4573028-4573183,4573491-4573532,
4573752-4573868,4573945-4574121
Length = 878
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 203 QLQKLAFNGIPDDKGLRSLVW-KILLHYLPQEKNARETTLIK 325
+L K + + DD+ LR +W K+ H + QEK + + K
Sbjct: 643 ELAKAEADKVEDDEELRKKLWLKVAKHVIEQEKGVKRENIKK 684
>01_01_1062 +
8381281-8381490,8382353-8382449,8382546-8382637,
8382729-8382860,8382975-8383160,8383244-8383407,
8383514-8383592,8384484-8384612,8385102-8385229,
8385348-8385711
Length = 526
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/62 (29%), Positives = 26/62 (41%)
Frame = +2
Query: 296 KNARETTLIKKRQLYKQFIEEIIVSPGGPTDHPLNMSPDSSWSTYFKDNEVLLQIDKDVR 475
K+ RE +L+KKR+ Q + S D L P Y DN + L+ R
Sbjct: 38 KSRREESLLKKRREGLQAQAPVPASAATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFR 97
Query: 476 RL 481
+L
Sbjct: 98 KL 99
>07_03_1716 + 28955395-28955775,28955858-28956091
Length = 204
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 359 IIVSPGGPTDHPLNMSPDSSWSTYFKDNE 445
++++P P D + D WST KD E
Sbjct: 74 VVLAPANPKDEYQHWIKDMRWSTSIKDEE 102
>03_05_0168 -
21466431-21466445,21467053-21467160,21467222-21467365,
21467778-21467846,21467928-21468071,21468409-21468565,
21468671-21468767,21469015-21469297,21469382-21469507,
21470098-21470178,21471990-21472072,21472393-21472478,
21473329-21473422,21473516-21473681,21473777-21473851,
21474082-21474157,21474259-21474347
Length = 630
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 308 ETTLIKKRQLYKQFIEEIIVSPGGPTDHPLNMSPDSSW 421
+TT +L F+EE V+P +HP MSP + W
Sbjct: 463 QTTTRLLDKLVGHFLEETCVNPTFIINHPEIMSPLAKW 500
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,997,085
Number of Sequences: 37544
Number of extensions: 213622
Number of successful extensions: 487
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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