Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12a01f
         (531 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49879| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   1e-05
SB_17775| Best HMM Match : Coiled (HMM E-Value=2.3)                    38   0.005
SB_56721| Best HMM Match : DUF755 (HMM E-Value=0.52)                   31   0.44 
SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_25556| Best HMM Match : rve (HMM E-Value=2.8e-17)                   29   3.1  
SB_51883| Best HMM Match : Extensin_2 (HMM E-Value=1.3)                28   5.4  
SB_48678| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)          27   9.5  
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.5  

>SB_49879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 763

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 21/69 (30%), Positives = 43/69 (62%)
 Frame = +2

Query: 152 RIKAFEEVLDQDVIDMQQLQKLAFNGIPDDKGLRSLVWKILLHYLPQEKNARETTLIKKR 331
           +++ F ++L     D++ ++KL+++GIP    +R   W++L  YLP   + R+ TL +KR
Sbjct: 146 KLEKFGKLLAGPNTDLEAIRKLSWSGIP--MAVRPTTWQLLSGYLPANIDRRQATLDRKR 203

Query: 332 QLYKQFIEE 358
           + Y  F+++
Sbjct: 204 EEYHNFVKQ 212


>SB_17775| Best HMM Match : Coiled (HMM E-Value=2.3)
          Length = 877

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +2

Query: 383 TDHPLNMSPDSSWSTYFKDNEVLLQIDKDVRRL 481
           T HPL+   DS W  +FKDNE+   I +D+ RL
Sbjct: 199 TFHPLSQEEDSPWKKFFKDNELKAIILRDLERL 231


>SB_56721| Best HMM Match : DUF755 (HMM E-Value=0.52)
          Length = 516

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +2

Query: 248 LRSLVWKILLHYLPQEKNARETTLIKKRQLYKQFIEEIIVSPGGPTDHPLNMSPD 412
           LRSL   +   ++  +      T+  + ++Y  F EE   +P  P+D P  MSP+
Sbjct: 13  LRSLSEPVEARFVRFQPKTWRNTIAMRAEVYGNFAEECPKTPSEPSDSPGPMSPE 67


>SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1449

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 332  QLYKQFIEEIIVSPGGPTDHPLNMSPDSSW 421
            +L  +F+E   VSP    DHP  MSP S W
Sbjct: 943  KLVGEFLESQCVSPTFIIDHPEIMSPLSKW 972


>SB_25556| Best HMM Match : rve (HMM E-Value=2.8e-17)
          Length = 735

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = +2

Query: 194 DMQQLQKLAFNGIPDDKGLRSLVWK---ILLHYLPQEKNARETTLIKKRQLYKQFIEEII 364
           D Q       NG+  D   R + +K   I+L   P+   + +T +   R LY+  +  + 
Sbjct: 157 DKQAKTNGKMNGMAKDFAKRRVSFKLPQIILQKAPEITLSEQTIVEASRPLYQTKLRSLN 216

Query: 365 VSPGGPTDHPLNMSPDSSWS 424
           +SPG  + + +  SP+ + S
Sbjct: 217 LSPGPISANSMGKSPEETES 236


>SB_51883| Best HMM Match : Extensin_2 (HMM E-Value=1.3)
          Length = 295

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +2

Query: 275 LHYLPQEKNARETTLIKKRQLYKQFIEEIIVSPGGPTDHPLNMSPDSSW 421
           L +L + KN   TT++  R  Y +    ++VSP     H + +    SW
Sbjct: 158 LIFLTENKNKHGTTVMVSRPWYHRHGTTVMVSPSWYHRHGITVMVSPSW 206


>SB_48678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 578

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 239 DKGLRSLVWKILLHYLPQE--KNARETTLIKKRQLY 340
           +  LR  VW  LLH  P +  ++ RE  L+ K Q+Y
Sbjct: 195 EPSLRKEVWAHLLHVFPPDLTQDEREKFLLMKAQVY 230


>SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)
          Length = 1217

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 192  LICSSSRS*PSMEYLM-IKD*DH*FGKSYCIIYPKKRTL 305
            L CSS R  PS+     +KD +H   +  C+  P +RTL
Sbjct: 1145 LTCSSGRCVPSINLCDGVKDCEHGLDELRCVRLPDQRTL 1183


>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 450 CCKSTRTCEDSAPIYHSFNLLLN 518
           CC  T T  DSA  Y +F L LN
Sbjct: 44  CCIHTHTERDSASYYTAFTLALN 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,325,575
Number of Sequences: 59808
Number of extensions: 260211
Number of successful extensions: 597
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)