Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12a01f
         (531 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68117-1|CAA92181.2|  459|Caenorhabditis elegans Hypothetical pr...   110   5e-25
Z37983-2|CAA86055.1|  585|Caenorhabditis elegans Hypothetical pr...    63   1e-10
Z81074-7|CAB03042.1|  495|Caenorhabditis elegans Hypothetical pr...    41   6e-04
Z81074-6|CAE46669.1|  475|Caenorhabditis elegans Hypothetical pr...    41   6e-04
AL032626-17|CAA21536.1|  282|Caenorhabditis elegans Hypothetical...    28   3.6  
AC024209-2|AAF36056.1|  180|Caenorhabditis elegans Hypothetical ...    27   6.3  
AC024209-1|AAF36058.1|  180|Caenorhabditis elegans Hypothetical ...    27   6.3  
Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U49829-5|AAK68351.1|  564|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>Z68117-1|CAA92181.2|  459|Caenorhabditis elegans Hypothetical
           protein F45E6.3 protein.
          Length = 459

 Score =  110 bits (265), Expect = 5e-25
 Identities = 62/142 (43%), Positives = 84/142 (59%), Gaps = 13/142 (9%)
 Frame = +2

Query: 137 SLHKARIKAFEEVL--DQDVIDMQQLQKLAFNGIPDDKGLRSLVWKILLHYLPQEKNARE 310
           S +  R+   EEVL      ID+ +L+     G+P+   LR L W++LLHYLP E++  +
Sbjct: 3   SRYMERLAKIEEVLLIANKKIDINELRAGCSYGVPES--LRPLAWRLLLHYLPLERHKWQ 60

Query: 311 TTLIKKRQLYKQFIEEIIVSPGGPT-----------DHPLNMSPDSSWSTYFKDNEVLLQ 457
           T L ++R  Y Q IE+IIV PG  +           DHPL+  P S W  +F+DN+VL Q
Sbjct: 61  TFLAEQRDNYDQMIEQIIVEPGTASLQQSAAQNQDNDHPLSDHPTSDWQAFFQDNKVLSQ 120

Query: 458 IDKDVRRLCPDISFFQSATEFP 523
           IDKDVRRL P+I FFQ  + FP
Sbjct: 121 IDKDVRRLYPEIQFFQLLSRFP 142


>Z37983-2|CAA86055.1|  585|Caenorhabditis elegans Hypothetical
           protein B0393.2 protein.
          Length = 585

 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 7/110 (6%)
 Frame = +2

Query: 206 LQKLAFNGIPDDKGLRSLVWKILLHYLPQEKNARETTLIKKRQLYKQFIEEIIVSPGGPT 385
           L ++A +G       RS VW+++L  LP E +  E +L + R LY+   E  ++ P    
Sbjct: 31  LARVAASGSLRSSSCRSAVWRLVLRCLPYETSDWEISLSRSRNLYRAHKENHLIDPHDTK 90

Query: 386 -------DHPLNMSPDSSWSTYFKDNEVLLQIDKDVRRLCPDISFFQSAT 514
                  ++PL     + W+T+F+DN++   I KDV R  P+I FFQ+ +
Sbjct: 91  FSQDPEFNNPLASIEQNPWNTFFEDNDLRDIIGKDVSRTFPEIEFFQNTS 140


>Z81074-7|CAB03042.1|  495|Caenorhabditis elegans Hypothetical
           protein F32B6.8b protein.
          Length = 495

 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 32/105 (30%), Positives = 49/105 (46%)
 Frame = +2

Query: 191 IDMQQLQKLAFNGIPDDKGLRSLVWKILLHYLPQEKNARETTLIKKRQLYKQFIEEIIVS 370
           +D+++L++  + GIP    LR   W++L  YLP     RE TL  KR  Y  ++E+   S
Sbjct: 181 VDLEKLREDCWMGIPHK--LRPQAWRLLSGYLPTNAERREVTLQCKRDEYWHYVEQYFHS 238

Query: 371 PGGPTDHPLNMSPDSSWSTYFKDNEVLLQIDKDVRRLCPDISFFQ 505
                        D +  T+        QI+ D+ R+CP I  FQ
Sbjct: 239 ----------RFDDQNADTF-------RQINIDIPRMCPLIPLFQ 266


>Z81074-6|CAE46669.1|  475|Caenorhabditis elegans Hypothetical
           protein F32B6.8a protein.
          Length = 475

 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 32/105 (30%), Positives = 49/105 (46%)
 Frame = +2

Query: 191 IDMQQLQKLAFNGIPDDKGLRSLVWKILLHYLPQEKNARETTLIKKRQLYKQFIEEIIVS 370
           +D+++L++  + GIP    LR   W++L  YLP     RE TL  KR  Y  ++E+   S
Sbjct: 161 VDLEKLREDCWMGIPHK--LRPQAWRLLSGYLPTNAERREVTLQCKRDEYWHYVEQYFHS 218

Query: 371 PGGPTDHPLNMSPDSSWSTYFKDNEVLLQIDKDVRRLCPDISFFQ 505
                        D +  T+        QI+ D+ R+CP I  FQ
Sbjct: 219 ----------RFDDQNADTF-------RQINIDIPRMCPLIPLFQ 246


>AL032626-17|CAA21536.1|  282|Caenorhabditis elegans Hypothetical
           protein Y37D8A.21 protein.
          Length = 282

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 385 SWPSGRYNYFFYKLFIKLTFL 323
           SW  G +  FF+ LF K+T+L
Sbjct: 256 SWAFGNFQCFFWNLFSKITYL 276


>AC024209-2|AAF36056.1|  180|Caenorhabditis elegans Hypothetical
           protein Y75D11A.3 protein.
          Length = 180

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -2

Query: 488 RGRVFARPCRFATVPRYL*SKYSKSCRGSCLTDGQLALR---AIQLFLL*TV 342
           +GRV  R   F TVPR L  +  +      ++DG+L  +   AI L+L  TV
Sbjct: 29  KGRVLQRDPMFKTVPRLLFKELRQLPANDDISDGELKKKIADAIDLYLPETV 80


>AC024209-1|AAF36058.1|  180|Caenorhabditis elegans Hypothetical
           protein Y75D11A.2 protein.
          Length = 180

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -2

Query: 488 RGRVFARPCRFATVPRYL*SKYSKSCRGSCLTDGQLALR---AIQLFLL*TV 342
           +GRV  R   F TVPR L  +  +      ++DG+L  +   AI L+L  TV
Sbjct: 29  KGRVLQRDPMFKTVPRLLFKELRQLPANDDISDGELKKKVADAIDLYLPETV 80


>Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical
           protein T28B8.3a protein.
          Length = 1838

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 305 RETTLIKKRQLYKQFIEEIIVSPGGPTDHPLNMSPDSSWSTYFKD 439
           R TTLI   + +  F+ EII +P      P N+  DS W  Y ++
Sbjct: 418 RLTTLI---EAFTFFVYEIIRTPDAEYRTPRNIVYDSKWLIYMEE 459


>U49829-5|AAK68351.1|  564|Caenorhabditis elegans Hypothetical
           protein F27D9.7 protein.
          Length = 564

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -3

Query: 493 YIGAESSHVLVDLQQYLVIFEVSTPRAVGAHV*RMVSWPSGRYNYF 356
           YI + S H LV     LVI +V  P+  G     +VS+ +  YNY+
Sbjct: 373 YIDSYSLHTLVTTANNLVIQQVIIPQTPG-----VVSYDAPYYNYY 413


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,904,285
Number of Sequences: 27780
Number of extensions: 207799
Number of successful extensions: 495
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)