Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11p24r
(550 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1082 - 8847795-8848033,8848511-8848724 32 0.35
12_01_0651 - 5507935-5509638 29 1.8
11_01_0209 - 1642473-1642579,1642783-1642826,1642935-1643023,164... 29 2.4
11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-45... 29 2.4
12_01_0060 - 499291-501228 29 3.2
08_02_0383 - 16539472-16539633,16543044-16543205 28 5.6
06_03_0617 + 22773981-22774216,22774715-22774880 27 7.5
03_04_0058 - 16915281-16915313,16915424-16915535,16915585-169169... 27 7.5
01_06_0795 - 32051794-32053362,32053452-32053595,32054102-320549... 27 7.5
01_01_0758 + 5843702-5843874,5844021-5844083,5844174-5844290,584... 27 7.5
08_01_0198 + 1625893-1626795 27 9.9
>06_01_1082 - 8847795-8848033,8848511-8848724
Length = 150
Score = 31.9 bits (69), Expect = 0.35
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 195 WFLQPTKYENDVLFFIYNREYNDALKLG 112
W T Y DVL F YN+EY+D +G
Sbjct: 59 WLAGKTFYAGDVLVFKYNKEYHDVAVVG 86
>12_01_0651 - 5507935-5509638
Length = 567
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -2
Query: 249 IQDRVIFGTNXAXXTREQWFLQPTKYENDVLFFIYNREYNDALKLGRI 106
+QD I N TRE+W + T E ++L NR Y D K+ I
Sbjct: 153 VQDATIRKMNNGYWTREEWPPKDTWPELEMLAMESNRSYLDPWKVSSI 200
>11_01_0209 -
1642473-1642579,1642783-1642826,1642935-1643023,
1643114-1643158,1643484-1643591,1643691-1643776,
1643917-1644004,1644211-1644387,1644720-1644795,
1644898-1644947,1645030-1645092,1645332-1645434,
1645513-1645615,1645731-1645791,1646268-1646308,
1646792-1646825
Length = 424
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -2
Query: 393 AYGDGKEKNSDLISWKFITLWENXRVYFKIHNTKYSQYLKLSSTXD 256
AY D K S L +W +++ + +F +H+T YS+ L L + D
Sbjct: 201 AYWDSPRKKSLLQNWPWMSTMISY-CFFGLHDTAYSEILSLWAVSD 245
>11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-452293
Length = 1430
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 31 PGEDVRXTSYFTIVSKCHTVSRSVHNPTELQSIV 132
PGE +R T + S CHT + V T + IV
Sbjct: 1377 PGETIRVTKNLRVCSDCHTAIKLVSRITHREIIV 1410
>12_01_0060 - 499291-501228
Length = 645
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 31 PGEDVRXTSYFTIVSKCHTVSRSVHNPTELQSIV 132
PGE +R T + S CHT + + T + IV
Sbjct: 592 PGETIRVTKNLRVCSDCHTAIKLISRITHREIIV 625
>08_02_0383 - 16539472-16539633,16543044-16543205
Length = 107
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Frame = -2
Query: 303 HNTKYSQYLKLSS-------TXDCNIQDRVIFGTNXAXXTREQW 193
H+ Y++Y+K +S T DCNI DRV + R+ W
Sbjct: 26 HHKMYNRYVKRTSKFMAHDETEDCNIGDRVKLDPSRPLSKRKHW 69
>06_03_0617 + 22773981-22774216,22774715-22774880
Length = 133
Score = 27.5 bits (58), Expect = 7.5
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 189 GTTAPWXXRRCWCR 230
G ++ W RRCWCR
Sbjct: 71 GDSSMWQERRCWCR 84
>03_04_0058 -
16915281-16915313,16915424-16915535,16915585-16916990,
16919112-16919282
Length = 573
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = -2
Query: 408 ANEXLAYGDGKEKNSDLISWKFITLWENXRVYFKIHNTKYSQYLKLSSTXDCNIQDRVI 232
AN Y +E+N+DL+ W+ TL ++ + ++ L D +I DR+I
Sbjct: 439 ANATALYHYWQEQNADLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLI 497
>01_06_0795 -
32051794-32053362,32053452-32053595,32054102-32054965,
32055335-32055892
Length = 1044
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 258 DCNIQDRVIFGTNXAXXTREQWFLQPTKYENDVLFFIYNRE 136
D N+ R FG + + E LQP K EN +LF + R+
Sbjct: 745 DSNVP-RSPFGCSTSIMVSEGDLLQPEKIENGILFNVVKRD 784
>01_01_0758 +
5843702-5843874,5844021-5844083,5844174-5844290,
5847180-5847945
Length = 372
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = -2
Query: 441 LAXKLGPTLDPANEXLAYGDGKEKNSDLISWKFITLWENXRVYFKIHNTKYSQYLKLSS 265
+A GP L P N A+G G E S + + W + + N +S ++ L S
Sbjct: 146 IALYSGPALSPLNHHRAFGGGAESGSSGAATR--ARWVTGTLLMLLSNVTWSLWIVLMS 202
>08_01_0198 + 1625893-1626795
Length = 300
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 129 DALKLGRIVDASGDRMAFGHDGEVAGXP 46
D LK+ VD DR+ F HD +G P
Sbjct: 137 DCLKIECAVDVCRDRLTFHHDTPPSGEP 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,239,072
Number of Sequences: 37544
Number of extensions: 205038
Number of successful extensions: 504
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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