Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p24r
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U46675-6|AAB52642.1|  111|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AC006675-3|AAK84550.1|  335|Caenorhabditis elegans Serpentine re...    27   8.9  

>U46675-6|AAB52642.1|  111|Caenorhabditis elegans Hypothetical
           protein F35A5.2 protein.
          Length = 111

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -2

Query: 177 KYENDVLFFIYNREYND 127
           KY N    F YNREYND
Sbjct: 29  KYNNPPFCFAYNREYND 45


>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 117 LGRIVDASGDRMAFGHDGEVAGXPD 43
           LGR+ D  GD +  G DGE    PD
Sbjct: 223 LGRLHDLHGDSITVGADGEKVDRPD 247


>AC006675-3|AAK84550.1|  335|Caenorhabditis elegans Serpentine
           receptor, class h protein35 protein.
          Length = 335

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 119 SSVGLWTLRETVWHLDTMVK*LVSLTSS 36
           + +GLWT+  TVW L       +S+ SS
Sbjct: 146 AGIGLWTIPTTVWGLPNQYTEKLSIVSS 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,364,382
Number of Sequences: 27780
Number of extensions: 177806
Number of successful extensions: 464
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)