Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11p24f
(638 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te... 31 0.19
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 29 0.75
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa... 28 0.99
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo... 28 1.3
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 5.3
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 26 5.3
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po... 25 7.0
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 25 7.0
SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated |Schizosac... 25 7.0
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 7.0
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc... 25 7.0
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 9.2
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch... 25 9.2
>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
termination factor Reb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 504
Score = 30.7 bits (66), Expect = 0.19
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = +2
Query: 230 SIIQNVVNNLIIDKSRNTMEYCYKLWVGNGQHIVRKYFPYNFRLIMAGNFVKLIYRNYNL 409
+II V+N I+D+ + ++C ++W G +R ++ N ++ K IY +
Sbjct: 247 AIISQEVHNFIMDQGWSEYQFCNQIWAGKCPKTIRMFYS-NLYKKLSHRDAKSIYHHVRR 305
Query: 410 A 412
A
Sbjct: 306 A 306
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 28.7 bits (61), Expect = 0.75
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +2
Query: 74 VLAVSAGVTEMSAGSMSSSNKELEEKLYNSILTGDYDSAVRQSLEYENQGKGSII 238
V+ +AG+ + S+ N+++ K+ L G Y +A ++ QGKGS+I
Sbjct: 91 VMIANAGIA-IPHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLI 144
>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 889
Score = 28.3 bits (60), Expect = 0.99
Identities = 21/78 (26%), Positives = 32/78 (41%)
Frame = +2
Query: 101 EMSAGSMSSSNKELEEKLYNSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLIIDKSRN 280
EM S N LE D D R ++ + Q +++++ NL I + N
Sbjct: 404 EMGYTQKSIENDMLESFQKGVFRINDLDCLGRTNV-IQYQISRLVLKDIFFNLQIGVTFN 462
Query: 281 TMEYCYKLWVGNGQHIVR 334
+EY LW NG I +
Sbjct: 463 ILEYLRHLWSNNGDAIAK 480
>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 437
Score = 27.9 bits (59), Expect = 1.3
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = -2
Query: 295 AVLHGVPTLVNDQVVNYILDDGALALVLVFQALTD-SAVVVTGEDAVVQFLLEFFVRTAH 119
++LHG P L D+V N+ L +VLVF+A D +V G+ V L V ++H
Sbjct: 381 SILHGHPLLRGDEVGNFELGS---TVVLVFEAPADFEFLVKQGQKVRVGLPLGRVVPSSH 437
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 89 AGVTEMSAGSMSSSNKELEEKLYNSILTGDYDSAVRQSLE 208
A + + S + + +LE+ + ++LTGD SAV+ LE
Sbjct: 537 AEIVKDSFKIFNPEDSDLEKNITEALLTGDVLSAVKACLE 576
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +3
Query: 276 GTPWSTATSCGSATDSTLSESTSP 347
GT A S GSAT T SE T+P
Sbjct: 927 GTSNKPAFSFGSATSKTTSEGTAP 950
>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 481
Score = 25.4 bits (53), Expect = 7.0
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 284 MEYCYKLWVGNGQHIVRKYFPY 349
+EYC +L V G H++ + + Y
Sbjct: 140 LEYCLRLLVNYGDHVLTEKYTY 161
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -2
Query: 370 GHDESKVIGEVLSDNVLSVADPQLVAVLHGVPTLVNDQ 257
G++E +IG + + + + L+ V GVPTL+ Q
Sbjct: 1013 GNEEKPIIGGIEFSSGMGLLHTALLGVYAGVPTLLIKQ 1050
>SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 7.0
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Frame = +2
Query: 125 SSNKELEEKLYNSILTGDYDSAVRQSLEYEN---QGKGSIIQNVVNNLIIDKSR 277
SSN +LE++LY+ + D+ + ++Q L+ E + + + + N+ I+ SR
Sbjct: 89 SSNMQLEQQLYSDL---DHINVLQQELKVETARLENEQKSYEEMKQNMAINNSR 139
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.4 bits (53), Expect = 7.0
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 98 TEMSAGSMSSSNKELEEKLYNSILTGDYDSAVRQSLEYENQGKGSII 238
TEM + ++ NKEL E + + D ++AV S + S++
Sbjct: 1158 TEMKSETVEGDNKELRETMKGENVQTDSNAAVPSSKSSTEEPNESVL 1204
>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
polymerase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1120
Score = 25.4 bits (53), Expect = 7.0
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 9/122 (7%)
Frame = +2
Query: 125 SSNKELEEKLYNSILTGDYDSAVRQ-SLEYENQGKGSIIQNVVNNLIIDKSRNTMEYCYK 301
S+N +S+LT D + + SLE+ NQG N+ +++KS + +
Sbjct: 214 SANLNALRSSLSSLLTESIDLPIDEVSLEFGNQGDTF---NLARQKLLEKS--AILSAAE 268
Query: 302 LWVGNGQHIVRK---YFPYNFRLIMAGNFVKL---IYRNYNLA--LKLGPTLDPANERLA 457
+W + ++ + P N + +V+L +L L L +LD N+RL
Sbjct: 269 VWKSEHESVLNRGNLQVPKNVSSLFYSWYVQLEQLFKEEISLIDDLALNESLDKKNDRLI 328
Query: 458 YG 463
YG
Sbjct: 329 YG 330
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.0 bits (52), Expect = 9.2
Identities = 17/67 (25%), Positives = 33/67 (49%)
Frame = -2
Query: 334 SDNVLSVADPQLVAVLHGVPTLVNDQVVNYILDDGALALVLVFQALTDSAVVVTGEDAVV 155
S + VA PQ + +L +PT ++ + ++ +LA +L + V +TG + +
Sbjct: 2936 STGITLVAAPQSL-ILQDLPTAISALKITHVDLTPSLASILTPKTAPLLRVFITGGEQIK 2994
Query: 154 QFLLEFF 134
Q LL +
Sbjct: 2995 QELLNIW 3001
>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
Exg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 25.0 bits (52), Expect = 9.2
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +2
Query: 368 AGNFVKLIYRNYNLALKLGPTLDPANERLAYGDGKEKNSDLISW 499
AG + I+ Y+ +++ P + P NE YG + +L W
Sbjct: 125 AGLYTMGIFDKYDDSVQANPNVPPLNEPFPYGRLPIRGVNLGGW 168
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,363,104
Number of Sequences: 5004
Number of extensions: 45212
Number of successful extensions: 151
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -