Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11p23r
(413 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0058 + 438000-438230,438847-438902,440003-440117,440314-44... 30 0.64
09_04_0385 + 17167174-17167440,17173321-17173962 30 0.64
02_05_0516 + 29694631-29695182 30 0.64
11_06_0572 + 25083629-25083637,25084380-25084808,25085189-25086568 29 1.5
01_03_0045 + 11929624-11929890,11930500-11930551,11932683-119331... 29 1.9
12_02_0874 + 23915303-23915543,23915630-23915713,23915797-239163... 28 3.4
12_02_0792 - 23191120-23191313,23191419-23191775,23192027-231921... 27 4.5
10_05_0011 - 7822847-7822880,7823653-7823754,7823859-7824106,782... 27 5.9
04_04_1565 - 34451411-34451875,34454077-34455249,34455340-34455402 27 5.9
01_06_0208 - 27540077-27540992,27541310-27541497 27 5.9
07_01_0455 - 3458432-3458574,3458768-3460619 27 7.8
06_01_0906 + 6990892-6991615,6992480-6992679,6992822-6993002,699... 27 7.8
06_01_0012 + 166514-167194 27 7.8
05_04_0317 + 20157849-20158364,20158465-20158628,20159471-201595... 27 7.8
02_05_0682 + 30857876-30858106,30858187-30858399,30858867-308590... 27 7.8
>11_01_0058 +
438000-438230,438847-438902,440003-440117,440314-440424,
442331-442518,442957-443013,443109-443268,443368-443436,
443580-443699
Length = 368
Score = 30.3 bits (65), Expect = 0.64
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = -1
Query: 374 GDYPKEYNPAVHGPYDPARYYGKPDTPFSQLKLNEIGSWFGRRSKTPSAVAGA 216
GD+ Y P Y P Y+G+P P + L+ +G TPS V A
Sbjct: 15 GDHYPYYKPTSRPHYQPPHYHGQPAAPPAPLQQQHLGP----HGVTPSTVGVA 63
>09_04_0385 + 17167174-17167440,17173321-17173962
Length = 302
Score = 30.3 bits (65), Expect = 0.64
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 189 LPSPPGSTESSGHGRRSLAAATEPRTD 269
LP P +T SSG+ R S +A++ PR D
Sbjct: 146 LPPEPSATTSSGNDRSSSSASSPPRAD 172
>02_05_0516 + 29694631-29695182
Length = 183
Score = 30.3 bits (65), Expect = 0.64
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = -1
Query: 260 WFGRRSKT-PS--AVAGAFSRAWWRWQHKYVQPKKVGMA 153
W RRSK+ PS A AG + WW W ++ KK G A
Sbjct: 67 WAFRRSKSAPSLGAFAGGPLKRWWDWGVGWLMSKKPGFA 105
>11_06_0572 + 25083629-25083637,25084380-25084808,25085189-25086568
Length = 605
Score = 29.1 bits (62), Expect = 1.5
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +2
Query: 173 VVRTYVAISTRLD*KLRPRQTESCCGDRTTNRFRSASTD*MEYQVFHSSVQDRKAHV 343
++ +A T++ +L P + C D T FR AS D ++ +FH K H+
Sbjct: 518 MIEQRLAYWTKVKCELPPMHHDGECPDHMTTIFRDASRDSIDRAMFHDVFLVIKTHL 574
>01_03_0045 +
11929624-11929890,11930500-11930551,11932683-11933103,
11933574-11934162
Length = 442
Score = 28.7 bits (61), Expect = 1.9
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 261 RTDFVQLQLTEWSIRFSIVACRIVRPMYSRIILLGVITESHIFRKARCT 407
R+DF + + + R VACR++ +R++ L + + RKAR T
Sbjct: 304 RSDFRLIAIDLVASRSRQVACRLLSRRTTRVLCLAISLSNATHRKARAT 352
>12_02_0874 +
23915303-23915543,23915630-23915713,23915797-23916312,
23916426-23916482,23916630-23916802,23916886-23917014,
23917102-23917296,23917381-23917503,23918171-23918284
Length = 543
Score = 27.9 bits (59), Expect = 3.4
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -2
Query: 265 VRGSVAAARLRLPWPELSVEPGGDGNISTYNLRRLAWLHS 146
VR S A +R P + VE DG+ T++L +L W HS
Sbjct: 34 VRASDAGSRAA-PGEVVHVEAKSDGSNVTFHLTQLQWHHS 72
>12_02_0792 -
23191120-23191313,23191419-23191775,23192027-23192108,
23192186-23193097,23193190-23193346,23193540-23193694,
23194667-23194819,23195334-23195627,23195711-23195896,
23196062-23196662,23196868-23196992,23197101-23197197,
23197299-23197411,23198129-23198233
Length = 1176
Score = 27.5 bits (58), Expect = 4.5
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = -1
Query: 344 VHGPYDPARYYGKPDTPFSQLKLNEIGSWFGRRSKTPSAVAGAFSRAWWRWQHKYVQPKK 165
+HG KPD P L LN+ GS+ SK + + AWW + ++ +
Sbjct: 633 LHGASSTIIKNHKPDNPIPPLTLNQAGSFTVCHSKAWD--SKIVTSAWWVYPYQVSKTAP 690
Query: 164 VG 159
G
Sbjct: 691 TG 692
>10_05_0011 -
7822847-7822880,7823653-7823754,7823859-7824106,
7824195-7824240,7824368-7825984,7826673-7826797,
7826915-7829083
Length = 1446
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +3
Query: 189 LPSPPGSTESSGHGRRS 239
LPS PGST SSG+ RS
Sbjct: 847 LPSTPGSTTSSGYPSRS 863
>04_04_1565 - 34451411-34451875,34454077-34455249,34455340-34455402
Length = 566
Score = 27.1 bits (57), Expect = 5.9
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = -1
Query: 311 GKPDTPFSQLKLNEIGSWFGRRS--KTPSAVAGAFSRAWW 198
G P+ S + FGR S KTP ++ F+R WW
Sbjct: 169 GTPNRSSSSCSSSPDTLGFGRSSSTKTPESMKPCFAREWW 208
>01_06_0208 - 27540077-27540992,27541310-27541497
Length = 367
Score = 27.1 bits (57), Expect = 5.9
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -1
Query: 242 KTPSAVAGAFSRAWWRW 192
+ P AG+F WWRW
Sbjct: 275 RAPPLSAGSFLTGWWRW 291
>07_01_0455 - 3458432-3458574,3458768-3460619
Length = 664
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 148 NGAMPTFLGCTYLCCHLHQARLKAPATAD 234
N A P+ C++L H+H +KA A D
Sbjct: 152 NAAGPSASACSFLGSHVHALAVKAGAAGD 180
>06_01_0906 +
6990892-6991615,6992480-6992679,6992822-6993002,
6993855-6994046,6994492-6994724,6995537-6995638,
6995776-6995826,6996234-6996338,6997287-6997353,
6997946-6997962
Length = 623
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 188 HKYVQPKKV-GMAPFYQLLVGSMVFFYAINYGRIKHHKNYKY 66
HK + P + G P Y ++ G + ++ Y R ++ K+Y+Y
Sbjct: 476 HKRLIPAHIKGRPPSYYIVAGFVFMVVSVPYLRSEYGKDYEY 517
>06_01_0012 + 166514-167194
Length = 226
Score = 26.6 bits (56), Expect = 7.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 159 ANLLRLYVLMLPSPPGSTESSGHGRRSLAAATEPRT 266
A + LY +LPSPP +S G+R + A E T
Sbjct: 2 AAMASLYRRVLPSPPAVEFASEEGKRLFSEALESGT 37
>05_04_0317 +
20157849-20158364,20158465-20158628,20159471-20159522,
20159618-20159845,20159928-20160464
Length = 498
Score = 26.6 bits (56), Expect = 7.8
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 174 LYVLMLPSPPGSTESSGHGRRSLAAATEPRT 266
LY LPSPP +S GRR A A + T
Sbjct: 21 LYGRALPSPPAVEFASAEGRRLFAEALQGGT 51
>02_05_0682 +
30857876-30858106,30858187-30858399,30858867-30859067,
30859832-30860086,30860189-30860884
Length = 531
Score = 26.6 bits (56), Expect = 7.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -1
Query: 260 WFGRRSKTPSAVAGA 216
WFGRRS P+ + GA
Sbjct: 455 WFGRRSSNPNVLVGA 469
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,667,753
Number of Sequences: 37544
Number of extensions: 248767
Number of successful extensions: 858
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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