Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p23f
         (460 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.11 |atp17||F0 ATPase subunit F|Schizosaccharomyces pomb...    31   0.085
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    27   1.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   3.2  
SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch...    26   3.2  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    25   5.6  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    25   5.6  
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    25   5.6  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    25   5.6  
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    25   7.3  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    25   7.3  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    24   9.7  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   9.7  

>SPBC1604.11 |atp17||F0 ATPase subunit F|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 96

 Score = 31.1 bits (67), Expect = 0.085
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +1

Query: 124 SQLKLNEIGSWFGRRSKTPSAVAGAFSRAWWRWQHKYVQPKKVGMAPFYQLLVGSMVFFY 303
           S  ++  I  ++ R    P+      S +++ W +K    K    AP   L+   +VF Y
Sbjct: 25  SSARMGRIVDFYSRLPHGPAPKKS--SNSFFSWYYKKYLGKNASGAPLLHLVGAVLVFSY 82

Query: 304 AIN-YGRIKHHKNY 342
           A   Y  I+HH+ +
Sbjct: 83  ASEYYYHIRHHEEH 96


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 322 FFHS*WHRRRPCCQRVVDRMEPCQPS*VVRTYVAISTRLD 203
           F+ S  H+ R    R ++RME C    ++  Y+   T LD
Sbjct: 27  FYWSQIHKVRKLVDRSIERMESCSIINIITKYIIEQTDLD 66


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
 Frame = +1

Query: 16  GFSKNMAFGDYPKEYNPAVHGPYDPARYYGKPDTPFSQLK-LNEIGSWFGRRSKTPSAVA 192
           G   N    +Y ++  P    PY P  Y G    PF Q +   +  + FG  S+   +VA
Sbjct: 28  GMPINQGGMNYQQQTYP-YQQPYQPDGYAGNTMLPFQQSQPATQFNNGFGYASQPTGSVA 86

Query: 193 GAFSRAWWRWQHKYVQPKKVGMAPFYQ 273
               +    + +  + P+ +    F Q
Sbjct: 87  DYGQQQQQMYGYNGMMPQTMNNTGFMQ 113


>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 234

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -2

Query: 201 ESSGHGRRSLAAATEPRTDFVQLQLTEWSIRFSIVACRIVRPMY 70
           ESS HG  SL  A +P T  V   L  W+ +F+    R+    Y
Sbjct: 24  ESSAHGDASLGQADKPLTVDV---LDAWTTQFTKKQTRVFHEAY 64


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 10  ASGFSKNMAFGDYPKEYNPAVHGPYDPARYYGKPD 114
           A   S+N A+G  P+ Y P    P  P  Y  +P+
Sbjct: 87  APAASQNRAYGAAPQPYPPQGGYPQQPYYYPNQPN 121


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 407 NKTDYILIHTATGTESVL*WY 345
           N  D I +H  T  ESV+ WY
Sbjct: 473 NNIDRISLHVQTTNESVIKWY 493


>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 22/78 (28%), Positives = 33/78 (42%)
 Frame = -1

Query: 286 CQRVVDRMEPCQPS*VVRTYVAISTRLD*KLRPRQTESCCGDRTTNRFRSASTD*MEYQV 107
           CQR  D +E          YV   + L+ K    +TE+   +      +S+ST  +    
Sbjct: 320 CQRATDIIERSM------NYVFGESELEEKNASTKTENDSNEDDKEECQSSSTSSVPEST 373

Query: 106 FHSSVQDRKAHVQQDYTP 53
             S+ + R  HVQ DY P
Sbjct: 374 A-STPKKRILHVQNDYVP 390


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 160 RTTNRFRSASTD*MEYQVFHSSVQDRKAHVQQDYT 56
           R +NR    + D +E +V  ++ + RK   +QDYT
Sbjct: 88  RVSNRSHVRTIDGIEEKVHTNTFEPRKPKQKQDYT 122


>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
 Frame = +2

Query: 206 EPGGDGNISTYNLRRLAWLHS--INYS--LAAWSSSM 304
           EP G+G+I+T N  RL  L S  +N++   AAW  ++
Sbjct: 289 EPNGEGSIATINGLRLGRLPSQKVNWAEINAAWGMTV 325


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 176 LRLPWPELSVEPGGD 220
           +R+PWP L+VE  GD
Sbjct: 174 IRIPWPVLTVEFYGD 188


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 264 WSHANLLRLYVLMLPSPPGSTESSGHGRRSLAAATEPRTDFVQLQLT 124
           W        Y ++  SPP S E  G+   +  AAT P+ DF+  ++T
Sbjct: 535 WPKTKFQDFYYIL--SPP-SVERLGYMIDAGQAATFPKLDFIAARMT 578


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +1

Query: 229 KYVQPKKVGMAPFYQLLVGSMVFFYAINYGRIKHHKNYK 345
           K + PK +     Y  +   ++F+  +N    KH+K Y+
Sbjct: 7   KQMIPKLLPFIFIYLSVANKIMFYCILNERAFKHYKTYR 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,868,920
Number of Sequences: 5004
Number of extensions: 37309
Number of successful extensions: 99
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)