Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11p23f
         (460 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   0.91 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   2.8  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   3.7  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   4.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 0.91
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 112 DTPFSQLKLNEIGSWF 159
           ++P  QL LNEI +WF
Sbjct: 519 ESPDKQLTLNEIYNWF 534


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 179 RLPWPELSVEPGGDGNIST 235
           RLPW EL  +P  D   +T
Sbjct: 342 RLPWLELQEKPISDSTSTT 360


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +3

Query: 282 WQHGLLLCHQLWKN*APQELQIPLKN 359
           W   + +    WKN  P  L   LKN
Sbjct: 59  WNDKVFITIPRWKNGVPSNLNFFLKN 84


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 17  AFLKIWLSVITPRSIILLYMGLTILH 94
           A +  WLS I    +ILL  G  ++H
Sbjct: 46  ANIPTWLSFIRIVLVILLRAGYVLIH 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,391
Number of Sequences: 438
Number of extensions: 2537
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)